Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 196 5e-45
seq116239 102 8e-17
>seq69808
Length=9325
Score = 196 bits (216), Expect = 5e-45
Identities = 1112/1776 (63%), Gaps = 36/1776 (2%)
Strand=Plus/Minus
Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730
||| || || |||||| || |||| || || ||||| ||||| ||||||||||| ||
Sbjct 8280 TTTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCC 8221
Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790
||||| ||||| ||||| | | |||| |||| ||| | || | ||
Sbjct 8220 AGTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGG 8161
Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850
| |||| | | ||||| || || |||||||| ||||| || || ||||| || ||
Sbjct 8160 TTCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGC 8101
Query 153851 CATGT-CAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909
||| | || | ||||| |||| |||||||| || ||||| || | || ||
Sbjct 8100 CATTTGCATTTGTGTTTTAACTGAA-ATTTCCCAAACTGTTTTATATAAATCTCGTATTG 8042
Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969
| ||||| |||||||| || | | || | || || || | ||| ||
Sbjct 8041 ATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCA 7982
Query 153970 TGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTT 154029
| | || || | |||| ||| |||||||| | ||| || |||| |||
Sbjct 7981 TATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAA 7922
Query 154030 GAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATT 154089
||| || || | ||||| || || ||| | ||| || | ||||| || ||||
Sbjct 7921 CAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATT 7862
Query 154090 CGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGT 154149
|||| || ||||| ||||| ||||| | |||||| ||||| || | |||||||| |
Sbjct 7861 CGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAAT 7802
Query 154150 TTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACA----AGTTG 154205
|||| | ||| |||| | ||| ||| | || ||||||||| | |||||
Sbjct 7801 TTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTG 7742
Query 154206 GTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTA 154265
|| ||| | |||||||| || ||||| | | ||| || | || || |
Sbjct 7741 GT--GTTTTA--TTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCA 7686
Query 154266 TAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAG 154325
|| | || | || | | || || || |||||||| || ||||| || ||||
Sbjct 7685 TATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAA 7626
Query 154326 TATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAAT 154385
|| | ||||| ||||||| ||||| | | |||| |||||||| || || |
Sbjct 7625 TAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAA 7566
Query 154386 CCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTT 154445
| || || | ||| ||||| || | ||||| | ||| | |||| |||| ||
Sbjct 7565 CGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGA 7506
Query 154446 AAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANN 154505
||||| |||| ||| || | | |||||||||||| ||||| ||||||||||| |
Sbjct 7505 AAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAA 7446
Query 154506 NNNNNNNNNNNNNNnnnnnnnnNNNNNNNNNATGCGACAAAATCAAA----CACTCCGCT 154561
| ||||||| | || ||
Sbjct 7445 TTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTGC- 7387
Query 154562 TTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACT 154621
| ||| ||| ||||| | | || || || || ||||| || ||||| || | |
Sbjct 7386 TGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTG--GT 7329
Query 154622 ACTG--TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTC 154679
||| |||| |||||||||| |||| |||||| ||| ||||||||| | |||||
Sbjct 7328 GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGT 7269
Query 154680 TGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACT 154739
||||| ||| || || || ||||| || || || || || || || ||||| |||
Sbjct 7268 TGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACT 7209
Query 154740 TGGGTTTCAATAATTGTGCGAAACAGACT--TCGCGCCTCAACTTGACAAGTAAATCGAT 154797
|| | |||||| || || || || | | || || | || | | || |||
Sbjct 7208 TGAGATTCAATTAT--AGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGAC 7151
Query 154798 TTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAAC 154857
||| | ||||||| || |||| ||||| | | || | || | | ||||
Sbjct 7150 CTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAATAAAC 7091
Query 154858 CGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAA 154917
| ||||| | |||||||| |||||||| | || | || || ||||||||||
Sbjct 7090 CAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATAA 7031
Query 154918 ACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCA 154977
| ||||| || | ||||| || || || ||||| | || | ||||| | ||
Sbjct 7030 ATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCAG 6971
Query 154978 TGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGG 155037
| ||| |||||||| ||||| ||| | || || || ||||| || |||||||| | |
Sbjct 6970 TATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATAG 6911
Query 155038 CCATCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACA 155094
| | || ||| ||| || || |||||||| || | | || |||||| | |
Sbjct 6910 CAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAGA 6851
Query 155095 CGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGC 155154
| || |||| |||| | | || | | | || || |||||| || | | ||
Sbjct 6850 CACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCTT 6791
Query 155155 GAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TTGCGC 155212
| ||| ||| ||||| | || | ||| || | | ||| ||||| ||||||
Sbjct 6790 TTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGATATCATTGCGC 6731
Query 155213 ACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAA 155272
| || | | | || | || |||| || || || || || || || ||
Sbjct 6730 ATTGT--TCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAAAAA 6673
Query 155273 ACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGT 155332
||| || ||||||||||| || | | || ||||||||||| || || || ||
Sbjct 6672 ACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATGAGT 6613
Query 155333 AAACATTTTGTTGGCGGTTAA---GTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACC 155389
||| || ||| | | ||| || |||||||| || | || ||||| | | |||
Sbjct 6612 AAA-ATAACGTT--CTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556
Query 155390 GTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425
||||||||| | || || ||||| | ||| |||||
Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTG 6520
>seq116239
Length=11340
Score = 102 bits (112), Expect = 8e-17
Identities = 165/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | | ||| || | ||||| || ||||| ||||||||||||||||| |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | | || || | ||||| || ||| |||| | || || || || || |||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCA-CCGGCGTCCA 64394
|| ||||| || ||||| | | |||||||| ||| || | ||| ||| |||| || |
Sbjct 4672 ATGCCTTCCTTGTCTTG-AATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGC-TCAA 4729
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | || | || || || || ||||||||||| ||||| ||||||||
Sbjct 4730 CCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498812304325360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |