Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq69808 196 5e-45 seq116239 102 8e-17 >seq69808 Length=9325 Score = 196 bits (216), Expect = 5e-45 Identities = 1112/1776 (63%), Gaps = 36/1776 (2%) Strand=Plus/Minus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 ||| || || |||||| || |||| || || ||||| ||||| ||||||||||| || Sbjct 8280 TTTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCC 8221 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||||| ||||| ||||| | | |||| |||| ||| | || | || Sbjct 8220 AGTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGG 8161 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | |||| | | ||||| || || |||||||| ||||| || || ||||| || || Sbjct 8160 TTCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGC 8101 Query 153851 CATGT-CAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||| | || | ||||| |||| |||||||| || ||||| || | || || Sbjct 8100 CATTTGCATTTGTGTTTTAACTGAA-ATTTCCCAAACTGTTTTATATAAATCTCGTATTG 8042 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969 | ||||| |||||||| || | | || | || || || | ||| || Sbjct 8041 ATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCA 7982 Query 153970 TGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTT 154029 | | || || | |||| ||| |||||||| | ||| || |||| ||| Sbjct 7981 TATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAA 7922 Query 154030 GAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATT 154089 ||| || || | ||||| || || ||| | ||| || | ||||| || |||| Sbjct 7921 CAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATT 7862 Query 154090 CGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGT 154149 |||| || ||||| ||||| ||||| | |||||| ||||| || | |||||||| | Sbjct 7861 CGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAAT 7802 Query 154150 TTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACA----AGTTG 154205 |||| | ||| |||| | ||| ||| | || ||||||||| | ||||| Sbjct 7801 TTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTG 7742 Query 154206 GTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTA 154265 || ||| | |||||||| || ||||| | | ||| || | || || | Sbjct 7741 GT--GTTTTA--TTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCA 7686 Query 154266 TAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAG 154325 || | || | || | | || || || |||||||| || ||||| || |||| Sbjct 7685 TATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAA 7626 Query 154326 TATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAAT 154385 || | ||||| ||||||| ||||| | | |||| |||||||| || || | Sbjct 7625 TAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAA 7566 Query 154386 CCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTT 154445 | || || | ||| ||||| || | ||||| | ||| | |||| |||| || Sbjct 7565 CGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGA 7506 Query 154446 AAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANN 154505 ||||| |||| ||| || | | |||||||||||| ||||| ||||||||||| | Sbjct 7505 AAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAA 7446 Query 154506 NNNNNNNNNNNNNNnnnnnnnnNNNNNNNNNATGCGACAAAATCAAA----CACTCCGCT 154561 | ||||||| | || || Sbjct 7445 TTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTGC- 7387 Query 154562 TTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACT 154621 | ||| ||| ||||| | | || || || || ||||| || ||||| || | | Sbjct 7386 TGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTG--GT 7329 Query 154622 ACTG--TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTC 154679 ||| |||| |||||||||| |||| |||||| ||| ||||||||| | ||||| Sbjct 7328 GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGT 7269 Query 154680 TGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACT 154739 ||||| ||| || || || ||||| || || || || || || || ||||| ||| Sbjct 7268 TGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACT 7209 Query 154740 TGGGTTTCAATAATTGTGCGAAACAGACT--TCGCGCCTCAACTTGACAAGTAAATCGAT 154797 || | |||||| || || || || | | || || | || | | || ||| Sbjct 7208 TGAGATTCAATTAT--AGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGAC 7151 Query 154798 TTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAAC 154857 ||| | ||||||| || |||| ||||| | | || | || | | |||| Sbjct 7150 CTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAATAAAC 7091 Query 154858 CGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAA 154917 | ||||| | |||||||| |||||||| | || | || || |||||||||| Sbjct 7090 CAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATAA 7031 Query 154918 ACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCA 154977 | ||||| || | ||||| || || || ||||| | || | ||||| | || Sbjct 7030 ATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCAG 6971 Query 154978 TGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGG 155037 | ||| |||||||| ||||| ||| | || || || ||||| || |||||||| | | Sbjct 6970 TATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATAG 6911 Query 155038 CCATCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACA 155094 | | || ||| ||| || || |||||||| || | | || |||||| | | Sbjct 6910 CAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAGA 6851 Query 155095 CGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGC 155154 | || |||| |||| | | || | | | || || |||||| || | | || Sbjct 6850 CACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCTT 6791 Query 155155 GAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TTGCGC 155212 | ||| ||| ||||| | || | ||| || | | ||| ||||| |||||| Sbjct 6790 TTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGATATCATTGCGC 6731 Query 155213 ACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAA 155272 | || | | | || | || |||| || || || || || || || || Sbjct 6730 ATTGT--TCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAAAAA 6673 Query 155273 ACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGT 155332 ||| || ||||||||||| || | | || ||||||||||| || || || || Sbjct 6672 ACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATGAGT 6613 Query 155333 AAACATTTTGTTGGCGGTTAA---GTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACC 155389 ||| || ||| | | ||| || |||||||| || | || ||||| | | ||| Sbjct 6612 AAA-ATAACGTT--CTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556 Query 155390 GTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||||||| | || || ||||| | ||| ||||| Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTG 6520 >seq116239 Length=11340 Score = 102 bits (112), Expect = 8e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || | ||||| || ||||| ||||||||||||||||| | Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || | ||||| || ||| |||| | || || || || || ||| Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCA-CCGGCGTCCA 64394 || ||||| || ||||| | | |||||||| ||| || | ||| ||| |||| || | Sbjct 4672 ATGCCTTCCTTGTCTTG-AATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGC-TCAA 4729 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | || || || || ||||||||||| ||||| |||||||| Sbjct 4730 CCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498812304325360