Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq30817 104 7e-18 >seq30817 Length=4284 Score = 104 bits (114), Expect = 7e-18 Identities = 178/256 (70%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 32929 CCTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTT 32988 ||||| ||||| || || || ||||| || || || ||||||||||| || | ||| Sbjct 274 CCTTCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTG 215 Query 32989 CCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTCT 33048 ||||| ||||| || || |||||||| || | ||| | | || || ||||||||||| Sbjct 214 CCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCA 155 Query 33049 TTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAATTGCAGAGCC-TGATGCTGAATA 33107 ||| ||||| ||||| | || ||||| || | || ||| | | || | Sbjct 154 CGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGGC-----A 100 Query 33108 TTTAAC----TTCAGGGTCATTTCCGAGAGTGCCGACAATGATTACTTTATTTACGCC-- 33161 | |||| |||||| || | || || | |||| || ||||||||||||||||| Sbjct 99 TATAACGGATTTCAGGATCTTGCCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTC 40 Query 33162 -GCGTGCCATTTATTA 33176 || ||||||||||| Sbjct 39 TGCTGGCCATTTATTA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143813601412764