Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq116239 122 6e-23 seq8255 104 2e-17 >seq116239 Length=11340 Score = 122 bits (134), Expect = 6e-23 Identities = 162/219 (74%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATT--CTCGCGTCT 15024 ||| |||||||| || || || ||||| ||||||||||| || ||| || | || Sbjct 4569 AACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC--GACAATGTCCTACCATCC 4626 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || ||||| | |||||||| ||||| || |||||| ||||||||||| Sbjct 4627 TCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCT 4686 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||||| ||| ||| |||| || || || || || || || ||||| || Sbjct 4687 TGAATCTTTGC-TTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGT 4745 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 ||| || || | ||||||||||||||| ||||| ||||| Sbjct 4746 TTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT-TTTGA 4783 >seq8255 Length=4873 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||||||| ||| | | | |||| Sbjct 575 ACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTC 516 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||||||||||||| | || ||| |||||||||| ||| | || ||| ||||| | Sbjct 515 AATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGA 456 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| |||| || ||| || || || | ||| || || || || ||||| ||| Sbjct 455 ATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTA 396 Query 15148 CCTGTCA 15154 || |||| Sbjct 395 CCAGTCA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356811409324790