Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 122 6e-23
seq8255 104 2e-17
>seq116239
Length=11340
Score = 122 bits (134), Expect = 6e-23
Identities = 162/219 (74%), Gaps = 7/219 (3%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATT--CTCGCGTCT 15024
||| |||||||| || || || ||||| ||||||||||| || ||| || | ||
Sbjct 4569 AACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC--GACAATGTCCTACCATCC 4626
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||| || ||||| | |||||||| ||||| || |||||| |||||||||||
Sbjct 4627 TCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCT 4686
Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143
||| ||||| ||| ||| |||| || || || || || || || ||||| ||
Sbjct 4687 TGAATCTTTGC-TTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGT 4745
Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182
||| || || | ||||||||||||||| ||||| |||||
Sbjct 4746 TTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT-TTTGA 4783
>seq8255
Length=4873
Score = 104 bits (114), Expect = 2e-17
Identities = 135/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || |||||||| || || ||||| |||||||||||| ||| | | | ||||
Sbjct 575 ACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTC 516
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
||||||||||||||| | || ||| |||||||||| ||| | || ||| ||||| |
Sbjct 515 AATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGA 456
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| |||| || ||| || || || | ||| || || || || ||||| |||
Sbjct 455 ATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTA 396
Query 15148 CCTGTCA 15154
|| ||||
Sbjct 395 CCAGTCA 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356811409324790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |