Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 109 5e-19
>seq116239
Length=11340
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||||| || | |||||||| | || || || |||||||| ||||||||
Sbjct 4551 TCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGA 4610
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || | | ||| || | || |||||||| | ||||| || || ||||| || ||
Sbjct 4611 CAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 4670
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| ||||||| | ||| | | ||| || | | ||| | ||||| | ||| |
Sbjct 4671 AATGCCTTCCTTGT-CTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAA 4729
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | ||||| || || | |||||||||||||||||||||
Sbjct 4730 CCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474708532454560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |