Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq30817 82.4 2e-11 >seq30817 Length=4284 Score = 82.4 bits (90), Expect = 2e-11 Identities = 211/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 27604 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 27663 || || || ||||| ||||| || | ||||| ||||| || | ||| | | || Sbjct 331 TCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCT 272 Query 27664 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 27723 |||| ||| || || |||||||||| || | |||| | |||||||| | ||| || Sbjct 271 TCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCG 212 Query 27724 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 27783 | | | ||||| |||||||| || | || || || || || || || ||| Sbjct 211 AAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGC 152 Query 27784 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGC-CGTCCCTGATGGTGAATAACG 27842 || || || || || | |||||||| || | ||| | || | | || |||||| Sbjct 151 CAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTA-GGCATATAACG 93 Query 27843 AACCTCCGGGTCTTGCCCGACCCGGCC--TAAGATGATCACCTTATTTACGCCTCTACTA 27900 | || || |||||||| | || ||||| || || |||||||||||||| || Sbjct 92 GATTTCAGGATCTTGCCCTAGGTTACCGATAAGA--ATTACTTTATTTACGCCTCTGCTG 35 Query 27901 GCCATTTATGCCGCCTG 27917 ||||||||| | |||| Sbjct 34 GCCATTTATTACTCCTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137311909037784