Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_011976.1
Length=43016
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 82.4 2e-11
>seq30817
Length=4284
Score = 82.4 bits (90), Expect = 2e-11
Identities = 211/317 (67%), Gaps = 6/317 (2%)
Strand=Plus/Minus
Query 27604 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 27663
|| || || ||||| ||||| || | ||||| ||||| || | ||| | | ||
Sbjct 331 TCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCT 272
Query 27664 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 27723
|||| ||| || || |||||||||| || | |||| | |||||||| | ||| ||
Sbjct 271 TCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCG 212
Query 27724 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 27783
| | | ||||| |||||||| || | || || || || || || || |||
Sbjct 211 AAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGC 152
Query 27784 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGC-CGTCCCTGATGGTGAATAACG 27842
|| || || || || | |||||||| || | ||| | || | | || ||||||
Sbjct 151 CAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTA-GGCATATAACG 93
Query 27843 AACCTCCGGGTCTTGCCCGACCCGGCC--TAAGATGATCACCTTATTTACGCCTCTACTA 27900
| || || |||||||| | || ||||| || || |||||||||||||| ||
Sbjct 92 GATTTCAGGATCTTGCCCTAGGTTACCGATAAGA--ATTACTTTATTTACGCCTCTGCTG 35
Query 27901 GCCATTTATGCCGCCTG 27917
||||||||| | ||||
Sbjct 34 GCCATTTATTACTCCTG 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137311909037784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |