Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq69808 156 4e-33 seq116239 131 2e-25 seq34035 104 2e-17 >seq69808 Length=9325 Score = 156 bits (172), Expect = 4e-33 Identities = 452/688 (66%), Gaps = 17/688 (2%) Strand=Plus/Plus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 ||| || ||| | ||||| ||||| || || || || ||| | || ||||| || || || Sbjct 7194 TATAATTGAATCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAA 7253 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 | |||| ||||| ||| | || || || |||||||||||||| || | ||||| Sbjct 7254 TCGAAAAAGTAATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAAT 7313 Query 123707 TATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG 123764 | | ||||| |||| | ||| || | || || |||||||| ||||| ||| || | Sbjct 7314 TGTTGAATATTCAGCAC--CAGATGAAATAGCTGTTTGTAATTTAGCTTCAATT-GCTTT 7370 Query 123765 AA------TCGTTGCGTC-GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC 123817 || | ||| | | || || | | |||| ||| || ||| | || Sbjct 7371 AAATATGTTTGTTACAGCAGATAAAAAA---TATGATTTTAAAAAACTTAAAGAAGTTAC 7427 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 ||||| ||| || |||||||| |||||||| ||| |||||| ||||||||| || Sbjct 7428 AAAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGA 7487 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 ||| || ||||| || |||| | || | ||| | ||||| || || || Sbjct 7488 AGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGA 7547 Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCA 123997 || ||| | | |||| || || ||||| || |||||| || | ||| || Sbjct 7548 TGCATTTATTTTAATGCGTTACCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACA 7607 Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCA 124057 |||| |||||||||||||| || || || ||||| || |||||| | || || | | Sbjct 7608 AATATTTGAAACAATTTATTATGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATA 7667 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 || | || |||| || | || || | |||| |||||| | || || || || Sbjct 7668 TGGTTCATATGAAACATATGATGGATCACCAGTTAGCCAAGGTATACTTCAATATGATAT 7727 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177 ||||||| ||||| || || | ||| | |||| | | ||| || || | || Sbjct 7728 GTGGAATAAAACACCAACTGATCTATGGAATTGGAATGAACTTAAAGAAAAAAT-TAAAC 7786 Query 124178 -GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236 || ||| | || || || |||| | || ||||| || ||| | || || |||| Sbjct 7787 AACATGGTATCCGAAATTCTTTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAAA 7846 Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCC 124264 ||||||| || |||||||| || ||||| Sbjct 7847 TTTTAGGTAATAACGAATCATTTGAGCC 7874 >seq116239 Length=11340 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || | ||| || || ||||||||||| || || ||||| Sbjct 4549 ATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC 4608 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| |||||||| ||||| || | ||||| ||||| || || || Sbjct 4609 GACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGT 4668 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| ||| ||| | ||| | ||||| || | ||| Sbjct 4669 GGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCA 4728 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || |||| ||||||||||||||| ||||| Sbjct 4729 ACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 >seq34035 Length=19351 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | |||| ||||| ||||| || |||||||| |||||||| Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| || | |||||| || ||| | || || ||||| || || || ||| Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||||||||| || || ||| | ||| | || || || | ||||| Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || |||||||| ||||| || ||||| Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451250083568240