Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 156 4e-33
seq116239 131 2e-25
seq34035 104 2e-17
>seq69808
Length=9325
Score = 156 bits (172), Expect = 4e-33
Identities = 452/688 (66%), Gaps = 17/688 (2%)
Strand=Plus/Plus
Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646
||| || ||| | ||||| ||||| || || || || ||| | || ||||| || || ||
Sbjct 7194 TATAATTGAATCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAA 7253
Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706
| |||| ||||| ||| | || || || |||||||||||||| || | |||||
Sbjct 7254 TCGAAAAAGTAATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAAT 7313
Query 123707 TATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG 123764
| | ||||| |||| | ||| || | || || |||||||| ||||| ||| || |
Sbjct 7314 TGTTGAATATTCAGCAC--CAGATGAAATAGCTGTTTGTAATTTAGCTTCAATT-GCTTT 7370
Query 123765 AA------TCGTTGCGTC-GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC 123817
|| | ||| | | || || | | |||| ||| || ||| | ||
Sbjct 7371 AAATATGTTTGTTACAGCAGATAAAAAA---TATGATTTTAAAAAACTTAAAGAAGTTAC 7427
Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877
||||| ||| || |||||||| |||||||| ||| |||||| ||||||||| ||
Sbjct 7428 AAAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGA 7487
Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937
||| || ||||| || |||| | || | ||| | ||||| || || ||
Sbjct 7488 AGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGA 7547
Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCA 123997
|| ||| | | |||| || || ||||| || |||||| || | ||| ||
Sbjct 7548 TGCATTTATTTTAATGCGTTACCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACA 7607
Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCA 124057
|||| |||||||||||||| || || || ||||| || |||||| | || || | |
Sbjct 7608 AATATTTGAAACAATTTATTATGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATA 7667
Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117
|| | || |||| || | || || | |||| |||||| | || || || ||
Sbjct 7668 TGGTTCATATGAAACATATGATGGATCACCAGTTAGCCAAGGTATACTTCAATATGATAT 7727
Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177
||||||| ||||| || || | ||| | |||| | | ||| || || | ||
Sbjct 7728 GTGGAATAAAACACCAACTGATCTATGGAATTGGAATGAACTTAAAGAAAAAAT-TAAAC 7786
Query 124178 -GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236
|| ||| | || || || |||| | || ||||| || ||| | || || ||||
Sbjct 7787 AACATGGTATCCGAAATTCTTTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAAA 7846
Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCC 124264
||||||| || |||||||| || |||||
Sbjct 7847 TTTTAGGTAATAACGAATCATTTGAGCC 7874
>seq116239
Length=11340
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| || | | || | ||| || || ||||||||||| || || |||||
Sbjct 4549 ATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC 4608
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||| |||||||| ||||| || | ||||| ||||| || || ||
Sbjct 4609 GACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGT 4668
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||||||||| || |||||||| ||| ||| | ||| | ||||| || | |||
Sbjct 4669 GGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCA 4728
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | |||| ||||| || |||| ||||||||||||||| |||||
Sbjct 4729 ACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
>seq34035
Length=19351
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | | |||| ||||| ||||| || |||||||| ||||||||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| |||| ||| || | |||||| || ||| | || || ||||| || || || |||
Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||||||||| || || ||| | ||| | || || || | |||||
Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || || || || |||||||| ||||| || |||||
Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451250083568240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |