Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq30817 82.4 2e-11 >seq30817 Length=4284 Score = 82.4 bits (90), Expect = 2e-11 Identities = 211/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 25488 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 25547 || || || ||||| ||||| || | ||||| ||||| || | ||| | | || Sbjct 331 TCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCT 272 Query 25548 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 25607 |||| ||| || || |||||||||| || | |||| | |||||||| | ||| || Sbjct 271 TCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCG 212 Query 25608 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 25667 | | | ||||| |||||||| || | || || || || || || || ||| Sbjct 211 AAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGC 152 Query 25668 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGC-CGTCCCTGATGGTGAATAACG 25726 || || || || || | |||||||| || | ||| | || | | || |||||| Sbjct 151 CAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTA-GGCATATAACG 93 Query 25727 AACCTCCGGGTCTTGCCCGACCCGGCC--TAAGATGATCACCTTATTTACGCCTCTACTA 25784 | || || |||||||| | || ||||| || || |||||||||||||| || Sbjct 92 GATTTCAGGATCTTGCCCTAGGTTACCGATAAGA--ATTACTTTATTTACGCCTCTGCTG 35 Query 25785 GCCATTTATGCCGCCTG 25801 ||||||||| | |||| Sbjct 34 GCCATTTATTACTCCTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130791047053836