Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq69808 161 1e-34 >seq69808 Length=9325 Score = 161 bits (178), Expect = 1e-34 Identities = 478/728 (66%), Gaps = 13/728 (2%) Strand=Plus/Minus Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 ||| || |||||||| ||||| | | || | ||||||| || | || || || Sbjct 7932 ATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGG 7873 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 |||||| | || || ||||| || ||||| ||||| || ||||| ||||| ||||| || Sbjct 7872 CTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAAT 7813 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CG 116040 | | || |||| ||| |||| ||| || || | | ||| | | Sbjct 7812 TAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA 7753 Query 116041 TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGC 116100 ||| | || || || | ||| |||||||| | || || ||||||||| |||| Sbjct 7752 TAGATCAG-TTGGTGTTTTATTCC-ACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695 Query 116101 GATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 116160 ||||| ||| |||| ||||||| || | | || || |||||| | || ||||| | Sbjct 7694 GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAAT 7635 Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220 || | | ||| ||||| ||||| || | ||| | | || || || || ||| Sbjct 7634 GCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCA 7575 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 | | | ||| ||||||||| |||| || | ||||| || || | |||||||| Sbjct 7574 TATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGT 7515 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAAC 116339 ||||| | | ||| || ||| || ||| | |||||| |||| |||| |||| Sbjct 7514 CGATGACGAAAATTTGATTTTTTTGCT-TCTGGTAAAGGATAATAATTAATATCAATAAT 7456 Query 116340 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 116399 |||| | |||| | || |||| ||||| | ||| | ||| |||| ||||| | | Sbjct 7455 TTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTT 7396 Query 116400 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459 | ||| | | ||| || || | || ||||| || | |||||| |||| | Sbjct 7395 TTTA---TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339 Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 ||||| | | || || | |||||| ||||||| ||| || ||||||||||| Sbjct 7338 TTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCC 7279 Query 116520 CAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 | ||| | |||||| ||||| | ||||||||||| || || | ||||||||| || Sbjct 7278 AATGTTTTGTTGATT--ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTA 7221 Query 116578 CCCGTCTC 116585 || || || Sbjct 7220 CCAGTTTC 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612484989641040