Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 161 1e-34
>seq69808
Length=9325
Score = 161 bits (178), Expect = 1e-34
Identities = 478/728 (66%), Gaps = 13/728 (2%)
Strand=Plus/Minus
Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922
||| || |||||||| ||||| | | || | ||||||| || | || || ||
Sbjct 7932 ATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGG 7873
Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982
|||||| | || || ||||| || ||||| ||||| || ||||| ||||| ||||| ||
Sbjct 7872 CTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAAT 7813
Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CG 116040
| | || |||| ||| |||| ||| || || | | ||| | |
Sbjct 7812 TAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA 7753
Query 116041 TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGC 116100
||| | || || || | ||| |||||||| | || || ||||||||| ||||
Sbjct 7752 TAGATCAG-TTGGTGTTTTATTCC-ACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695
Query 116101 GATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 116160
||||| ||| |||| ||||||| || | | || || |||||| | || ||||| |
Sbjct 7694 GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAAT 7635
Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220
|| | | ||| ||||| ||||| || | ||| | | || || || || |||
Sbjct 7634 GCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCA 7575
Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280
| | | ||| ||||||||| |||| || | ||||| || || | ||||||||
Sbjct 7574 TATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGT 7515
Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAAC 116339
||||| | | ||| || ||| || ||| | |||||| |||| |||| ||||
Sbjct 7514 CGATGACGAAAATTTGATTTTTTTGCT-TCTGGTAAAGGATAATAATTAATATCAATAAT 7456
Query 116340 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 116399
|||| | |||| | || |||| ||||| | ||| | ||| |||| ||||| | |
Sbjct 7455 TTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTT 7396
Query 116400 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459
| ||| | | ||| || || | || ||||| || | |||||| |||| |
Sbjct 7395 TTTA---TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339
Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519
||||| | | || || | |||||| ||||||| ||| || |||||||||||
Sbjct 7338 TTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCC 7279
Query 116520 CAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTTGTAGAGCATATATGGCGTC 116577
| ||| | |||||| ||||| | ||||||||||| || || | ||||||||| ||
Sbjct 7278 AATGTTTTGTTGATT--ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTA 7221
Query 116578 CCCGTCTC 116585
|| || ||
Sbjct 7220 CCAGTTTC 7213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612484989641040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |