Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq116239 120 2e-22 seq34035 89.7 4e-13 >seq116239 Length=11340 Score = 120 bits (132), Expect = 2e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| ||||| || || ||||| | | Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| |||||||| || || ||||||| ||||| || ||||| | || Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| ||||| | | | |||||| | || || Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTTC 39731 ||||| ||||||||||| || |||||||||||||| || |||||||| | | || |||| Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTGAGTCTTTC 4790 >seq34035 Length=19351 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | || ||||| ||||||||||| |||||||| || |||||||| | Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | |||||| || | ||||||||||| || ||||| | || Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || || || ||||| | | | ||| || | | ||| || Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || || | |||||| || || |||||||| Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346805290920302