Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq50502 118 1e-21 seq34035 84.2 2e-11 >seq50502 Length=11567 Score = 118 bits (130), Expect = 1e-21 Identities = 194/278 (70%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| ||| ||| || |||||||||||||| || || ||||| || ||||| | || || Sbjct 4742 GCTTGGCTTTTGTACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTC 4801 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || | ||||| | ||| || ||||| || || || ||||| | || |||||||| Sbjct 4802 ATCACGTGAAATTAATTCATT--TGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTT 4859 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 | ||||||||| || || ||||| || |||||| | || || || || || ||||| Sbjct 4860 AACCAAAATATAGCTGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCA 4919 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 | | | || ||||| | || ||| || || ||||| | ||||| ||||| Sbjct 4920 ATAATTCTTTCACCGAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCT 4979 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||| ||| || ||||| | ||||| || || || || Sbjct 4980 TTTTTTTTAACACACGGTAATGTTTCAATAGCATTGAA 5017 >seq34035 Length=19351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| ||||| || ||||| || || || || ||||| || | || ||||| | Sbjct 10353 AAATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACC 10412 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | || | | ||| |||||| || |||| || ||||| || ||||| | || Sbjct 10413 CTCTGATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGA 10472 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || | |||| ||| || ||||| || || || | || ||| | || || Sbjct 10473 TCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTA 10532 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| || | || ||||||| || || || Sbjct 10533 TAACATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCG 10571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499339424584960