Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 118 1e-21
seq34035 84.2 2e-11
>seq50502
Length=11567
Score = 118 bits (130), Expect = 1e-21
Identities = 194/278 (70%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| ||| ||| || |||||||||||||| || || ||||| || ||||| | || ||
Sbjct 4742 GCTTGGCTTTTGTACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTC 4801
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
|| | ||||| | ||| || ||||| || || || ||||| | || ||||||||
Sbjct 4802 ATCACGTGAAATTAATTCATT--TGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTT 4859
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
| ||||||||| || || ||||| || |||||| | || || || || || |||||
Sbjct 4860 AACCAAAATATAGCTGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCA 4919
Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
| | | || ||||| | || ||| || || ||||| | ||||| |||||
Sbjct 4920 ATAATTCTTTCACCGAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCT 4979
Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136
|||| ||| || ||||| | ||||| || || || ||
Sbjct 4980 TTTTTTTTAACACACGGTAATGTTTCAATAGCATTGAA 5017
>seq34035
Length=19351
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| ||||| || ||||| || || || || ||||| || | || ||||| |
Sbjct 10353 AAATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACC 10412
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| | || | | ||| |||||| || |||| || ||||| || ||||| | ||
Sbjct 10413 CTCTGATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGA 10472
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||||| || | |||| ||| || ||||| || || || | || ||| | || ||
Sbjct 10473 TCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTA 10532
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||||| || | || ||||||| || || ||
Sbjct 10533 TAACATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCG 10571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499339424584960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |