Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq69808 235 7e-57 >seq69808 Length=9325 Score = 235 bits (260), Expect = 7e-57 Identities = 478/699 (68%), Gaps = 13/699 (2%) Strand=Plus/Plus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||||| || |||||||| ||||||||| | || ||||| || ||||| | ||| ||| Sbjct 7204 TCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAATCGAAAAAGT 7263 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 |||||| | || | || || || || || || ||||||||||| | |||| | Sbjct 7264 AATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAATTGTTGAATAT 7323 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| |||||| | ||||| ||||| | || ||||| ||| | || ||||| Sbjct 7324 TCAGCACCAGATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTT----AAATATGTT 7379 Query 112476 -GATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA 112533 | | ||| ||| ||| | || ||||| | ||||||| | |||||||| |||| ||| | Sbjct 7380 TGTTACAGCAGATAAAAA-ATATGATTTTAAAAAACTTAAAGAAGTTACAAAAATTGTTA 7438 Query 112534 CAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAA 112592 ||| ||| | || | | ||||||||| |||| ||| || | ||| || ||| Sbjct 7439 CAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGAA-GCAAAAAAA 7497 Query 112593 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT 112652 || ||| | | || || ||||||||| | || || ||||| | || |||| ||| ||| Sbjct 7498 TCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGATGCATTTATT 7557 Query 112653 CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAG 112712 | || || ||| ||| || ||||| || || | ||| | |||||||| Sbjct 7558 TTAATGCGTTACCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACAAATATTTGAA 7617 Query 112713 ACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATAT 112772 ||||| ||| | | || | ||||| |||| || || || || | ||||| ||||| Sbjct 7618 ACAATTTATTATGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATATGGTTCATAT 7677 Query 112773 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 112832 ||||| | ||| || || |||| | ||||| | ||||||| |||||||||| || Sbjct 7678 GAAACATATGATGGATCACCAGTTAGCCAAGGTATACTTCAATATGATATGTGG-AATAA 7736 Query 112833 GAGACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 112890 | ||||| || ||| | | ||| | | || || ||| || || | | ||| Sbjct 7737 AACACCAA-CTGATCTATGGAATTGGAATGAACTTAAAGAAAAAATTAAACAACATGGTA 7795 Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 | || || | | || || ||||||||||||||||| || || |||||||| || |||| Sbjct 7796 TCCGAAATTCTTTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAAATTTTAGGTA 7855 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 112989 |||| |||| ||||| || || || | || ||||||| Sbjct 7856 ATAACGAATCATTTGAGCCTTATACATCAAATATCTATC 7894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619708134531680