Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq69808 208 9e-49 >seq69808 Length=9325 Score = 208 bits (230), Expect = 9e-49 Identities = 463/688 (67%), Gaps = 9/688 (1%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 ||||||| || | || || || ||||| |||| |||||||| || |||||||| || | Sbjct 7894 GATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTG 7835 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | ||||||||||||||||| || || | | || || | ||| | || || || || Sbjct 7834 ATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTT 7775 Query 106053 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 | || || ||| ||| | | ||| | || ||||| | || |||||||||| |||| Sbjct 7774 CTTTAAGTTCATTCCAATTCCATAGATCAG-TTGGTGTTTTATT-CCACATATCATATTG 7717 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 ||| | |||||| || || || ||| |||| ||||| ||||| | |||||| Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 ||||| || || ||||| | | | | ||| || |||||||| || | ||| | Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 | || ||||| || ||| ||| ||| || ||||||||| |||| || | || Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 106349 ||| || || | |||||| |||| || || | ||| || ||| || ||| | | Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGC-TTCTGGTAAAG 7478 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409 ||||| |||| | ||||| | | || | |||| | |||||||| ||||| | ||| | Sbjct 7477 GATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTT 7418 Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 106469 |||||||| | ||||| | | | ||| | | ||| || | | || |||| Sbjct 7417 TAAGTTTTTTAAAATCATATTT---TTTATCTGCTGTAACAAACATATTTAAAGCAATTG 7361 Query 106470 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACA 106529 | || ||||| |||||||| | ||||| ||| || || | |||||||||||||| Sbjct 7360 AAGCTAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACA 7301 Query 106530 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589 || || ||||| || || | || | ||| ||||| ||| || |||||||| | Sbjct 7300 GATTACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTT 7241 Query 106590 TGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 | || | ||| || || || || || || Sbjct 7240 TATATAACATATATGGAGTACCAGTTTC 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588997788740560