Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 208 9e-49
>seq69808
Length=9325
Score = 208 bits (230), Expect = 9e-49
Identities = 463/688 (67%), Gaps = 9/688 (1%)
Strand=Plus/Minus
Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992
||||||| || | || || || ||||| |||| |||||||| || |||||||| || |
Sbjct 7894 GATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTG 7835
Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052
| ||||||||||||||||| || || | | || || | ||| | || || || ||
Sbjct 7834 ATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTT 7775
Query 106053 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110
| || || ||| ||| | | ||| | || ||||| | || |||||||||| ||||
Sbjct 7774 CTTTAAGTTCATTCCAATTCCATAGATCAG-TTGGTGTTTTATT-CCACATATCATATTG 7717
Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170
||| | |||||| || || || ||| |||| ||||| ||||| | ||||||
Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657
Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
||||| || || ||||| | | | | ||| || |||||||| || | ||| |
Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597
Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290
| || ||||| || ||| ||| ||| || ||||||||| |||| || | ||
Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537
Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 106349
||| || || | |||||| |||| || || | ||| || ||| || ||| | |
Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGC-TTCTGGTAAAG 7478
Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409
||||| |||| | ||||| | | || | |||| | |||||||| ||||| | ||| |
Sbjct 7477 GATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTT 7418
Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 106469
|||||||| | ||||| | | | ||| | | ||| || | | || ||||
Sbjct 7417 TAAGTTTTTTAAAATCATATTT---TTTATCTGCTGTAACAAACATATTTAAAGCAATTG 7361
Query 106470 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACA 106529
| || ||||| |||||||| | ||||| ||| || || | ||||||||||||||
Sbjct 7360 AAGCTAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACA 7301
Query 106530 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589
|| || ||||| || || | || | ||| ||||| ||| || |||||||| |
Sbjct 7300 GATTACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTT 7241
Query 106590 TGTAGAGCATGTAGGGCGTCCCCGTCTC 106617
| || | ||| || || || || || ||
Sbjct 7240 TATATAACATATATGGAGTACCAGTTTC 7213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588997788740560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |