Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq111833 102 6e-17 >seq111833 Length=3756 Score = 102 bits (112), Expect = 6e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 46321 CCCATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCA 46380 ||||| ||||| ||||||||||| | ||||| | || ||| ||| ||||||||| ||| Sbjct 1557 CCCATGTCATCTTCACCTTTACGATGGGGATTTTTTATCCATGCTTGGTTTTCATTCGCA 1616 Query 46381 TTAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACCCACGT 46440 || || |||||||| || |||||| | || || || ||||| ||||| ||||| Sbjct 1617 TTGGCGTTCCATGTATTGCAACCAATTTCACGAAACTGGGCTGCGTTATCATAGCCACGA 1676 Query 46441 AGATACCCAATCATTTCCATTATTGCTTGTTTTGCAAACGC-CTTACGAGTAGTAATAAG 46499 || ||||||| | || ||||| | |||| ||| || |||||||| ||||| | Sbjct 1677 AGGTACCCAAGAAGCTCAGCAATTGC-AGCTTTGTAAAAGCTTTTACGAGTCGTAATCAA 1735 Query 46500 GGGGAATT 46507 || |||| Sbjct 1736 AGGAAATT 1743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377983359090608