Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq19915 116 4e-21 >seq19915 Length=15128 Score = 116 bits (128), Expect = 4e-21 Identities = 375/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Minus Query 154557 GGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGAT 154616 || ||||| ||||| | | || ||| | ||| || ||||| || ||||| | || Sbjct 8160 GGATATCATAAAATGTTTAAAGAATTAGAAAAAGATTTGTGTGAAATAACAGGCTACGAC 8101 Query 154617 TCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATC 154676 || || || ||||| || ||| |||| || || ||||| ||||| ||| || Sbjct 8100 AAGATTTCTTTTCAACCAAATAGTGGAGCACAAGGAGAATATGCCGGACTTAGAGCCATT 8041 Query 154677 CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG--AGT 154734 | ||| ||| || | || | || | ||| | ||| | || ||| ||| Sbjct 8040 CGCCGATATCATGAATTTAAAAATGAAGGAAACCGTAATATCTGTCTAATTCCAATAAGT 7981 Query 154735 CAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCA 154794 || |||||||||||||| ||| ||| ||||| || |||||||| | | | | Sbjct 7980 --GCCCATGGAACTAATCCAGCTTCCGCTCAAATGGCTGGAATGAAAGTAGAACCGATTA 7923 Query 154795 -AGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGA-AAGCAATCATGAA 154852 | | || | ||| || | || ||||| || |||| | ||| |||| || |||| Sbjct 7922 GAATTTG-TACTGACGGCAGTATTGACATGAACCATCTTAA--AGACAAGCTTTC-TGAA 7867 Query 154853 TACATTTGAACTG------TCATGTATTATGATTACATACCCATCTACACATGGTGTATT 154906 | ||||| | || || ||||||| |||||||| || || || || || Sbjct 7866 T----TTGAAAAGGATTTATCTTGCCTTATGATAACATACCCTTCAACTATGGGAGTGTT 7811 Query 154907 TGAAACTAACATTAGACAGATATGTAAGATC--GTTCATGACAATGGTGGTCAGGTATAT 154964 |||| | | | | | ||||| | ||| ||||| | ||||||| || || || Sbjct 7810 TGAAGAAACCGT--GTCGGATATTTGCGATTTGGTTCACAAACATGGTGGGCAAGTTTAC 7753 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024 | |||||||| ||| | |||||||| || || || || |||| ||||| Sbjct 7752 TTAGATGGAGCGAATATGAATGCACAAGTCGGTTTATGTCGTCCTGGTGACTATGGAAGT 7693 Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084 || |||| ||| | ||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 7692 GACGTATCCCATTTGAACTTACATAAAACATTTTGTATTCCTCATGGTGGTGGAGGTCCC 7633 Query 155085 GGCGTAGGTCCTATAGGTGTAGCAAAACATCT 155116 || | || || || |||||| | ||||||| Sbjct 7632 GGAATGGGACCAATTGGTGTAAAAGAACATCT 7601 Score = 116 bits (128), Expect = 4e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| || || ||||| | || ||||| ||||| ||||||| ||| |||||| | | Sbjct 8976 CAAAGATTAGGCGTTCCTTTAGGTTATGGTGGTCCACATGCTGGATTTTTTGCATGTAGA 8917 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 | || | | || || ||| |||| | ||| || ||||| ||| || Sbjct 8916 CAGAATTTAGTTCGTTTAATGCCAGGCCGAATGATTGGTGTAACAAGAGATATTGACGGA 8857 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || | ||||| | ||||| |||| |||||||| || ||||| | |||| |||||| Sbjct 8856 CATGATGCATATCGTCTAGCATTACAAACTAGAGAACAACATATTCGTCGAGATAAAGCA 8797 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 || || ||||| ||||| ||||| || || || ||||||||||| | | ||||| | Sbjct 8796 ACTAGCAACATTTGCACTGCTCAAGCCCTTCTTGCTAATATGTCAGCTATGTATGCCATA 8737 Query 154008 TATCATGGTGCAGATGG 154024 ||||||||| |||| || Sbjct 8736 TATCATGGTCCAGAAGG 8720 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 |||||||| || ||||| ||||| | || ||| | || ||| |||| || ||||||||| Sbjct 9573 TACACTCCATACCAAGCAGAGATTGCACAAGGACGTTTAGAATCTTTGTTGAATTACCAA 9514 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || || | | ||| | || || ||| || || || || ||| |||||||||||| | Sbjct 9513 ACTCTGGTATCTGAAATGACTGGGTTAGATATGGCTAATGCTTCTTTATTAGATGAAGGA 9454 Query 153408 ACTGCAGCAGCAGAAGCAATG 153428 || ||||| |||||||||||| Sbjct 9453 ACAGCAGCGGCAGAAGCAATG 9433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578247730112960