Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq19915 116 4e-21
>seq19915
Length=15128
Score = 116 bits (128), Expect = 4e-21
Identities = 375/572 (66%), Gaps = 24/572 (4%)
Strand=Plus/Minus
Query 154557 GGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGAT 154616
|| ||||| ||||| | | || ||| | ||| || ||||| || ||||| | ||
Sbjct 8160 GGATATCATAAAATGTTTAAAGAATTAGAAAAAGATTTGTGTGAAATAACAGGCTACGAC 8101
Query 154617 TCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATC 154676
|| || || ||||| || ||| |||| || || ||||| ||||| ||| ||
Sbjct 8100 AAGATTTCTTTTCAACCAAATAGTGGAGCACAAGGAGAATATGCCGGACTTAGAGCCATT 8041
Query 154677 CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG--AGT 154734
| ||| ||| || | || | || | ||| | ||| | || ||| |||
Sbjct 8040 CGCCGATATCATGAATTTAAAAATGAAGGAAACCGTAATATCTGTCTAATTCCAATAAGT 7981
Query 154735 CAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCA 154794
|| |||||||||||||| ||| ||| ||||| || |||||||| | | | |
Sbjct 7980 --GCCCATGGAACTAATCCAGCTTCCGCTCAAATGGCTGGAATGAAAGTAGAACCGATTA 7923
Query 154795 -AGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGA-AAGCAATCATGAA 154852
| | || | ||| || | || ||||| || |||| | ||| |||| || ||||
Sbjct 7922 GAATTTG-TACTGACGGCAGTATTGACATGAACCATCTTAA--AGACAAGCTTTC-TGAA 7867
Query 154853 TACATTTGAACTG------TCATGTATTATGATTACATACCCATCTACACATGGTGTATT 154906
| ||||| | || || ||||||| |||||||| || || || || ||
Sbjct 7866 T----TTGAAAAGGATTTATCTTGCCTTATGATAACATACCCTTCAACTATGGGAGTGTT 7811
Query 154907 TGAAACTAACATTAGACAGATATGTAAGATC--GTTCATGACAATGGTGGTCAGGTATAT 154964
|||| | | | | | ||||| | ||| ||||| | ||||||| || || ||
Sbjct 7810 TGAAGAAACCGT--GTCGGATATTTGCGATTTGGTTCACAAACATGGTGGGCAAGTTTAC 7753
Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024
| |||||||| ||| | |||||||| || || || || |||| |||||
Sbjct 7752 TTAGATGGAGCGAATATGAATGCACAAGTCGGTTTATGTCGTCCTGGTGACTATGGAAGT 7693
Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084
|| |||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 7692 GACGTATCCCATTTGAACTTACATAAAACATTTTGTATTCCTCATGGTGGTGGAGGTCCC 7633
Query 155085 GGCGTAGGTCCTATAGGTGTAGCAAAACATCT 155116
|| | || || || |||||| | |||||||
Sbjct 7632 GGAATGGGACCAATTGGTGTAAAAGAACATCT 7601
Score = 116 bits (128), Expect = 4e-21
Identities = 180/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
||||| || || ||||| | || ||||| ||||| ||||||| ||| |||||| | |
Sbjct 8976 CAAAGATTAGGCGTTCCTTTAGGTTATGGTGGTCCACATGCTGGATTTTTTGCATGTAGA 8917
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887
| || | | || || ||| |||| | ||| || ||||| ||| ||
Sbjct 8916 CAGAATTTAGTTCGTTTAATGCCAGGCCGAATGATTGGTGTAACAAGAGATATTGACGGA 8857
Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947
|| | ||||| | ||||| |||| |||||||| || ||||| | |||| ||||||
Sbjct 8856 CATGATGCATATCGTCTAGCATTACAAACTAGAGAACAACATATTCGTCGAGATAAAGCA 8797
Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007
|| || ||||| ||||| ||||| || || || ||||||||||| | | ||||| |
Sbjct 8796 ACTAGCAACATTTGCACTGCTCAAGCCCTTCTTGCTAATATGTCAGCTATGTATGCCATA 8737
Query 154008 TATCATGGTGCAGATGG 154024
||||||||| |||| ||
Sbjct 8736 TATCATGGTCCAGAAGG 8720
Score = 102 bits (112), Expect = 9e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347
|||||||| || ||||| ||||| | || ||| | || ||| |||| || |||||||||
Sbjct 9573 TACACTCCATACCAAGCAGAGATTGCACAAGGACGTTTAGAATCTTTGTTGAATTACCAA 9514
Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407
|| || | | ||| | || || ||| || || || || ||| |||||||||||| |
Sbjct 9513 ACTCTGGTATCTGAAATGACTGGGTTAGATATGGCTAATGCTTCTTTATTAGATGAAGGA 9454
Query 153408 ACTGCAGCAGCAGAAGCAATG 153428
|| ||||| ||||||||||||
Sbjct 9453 ACAGCAGCGGCAGAAGCAATG 9433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578247730112960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |