Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq19915 129 7e-25
>seq19915
Length=15128
Score = 129 bits (142), Expect = 7e-25
Identities = 378/572 (66%), Gaps = 24/572 (4%)
Strand=Plus/Minus
Query 159232 GGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGAT 159291
|| ||||| ||||| | | || ||| | ||| || ||||| || ||||| | ||
Sbjct 8160 GGATATCATAAAATGTTTAAAGAATTAGAAAAAGATTTGTGTGAAATAACAGGCTACGAC 8101
Query 159292 TCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATC 159351
|| || || ||||| || ||| |||| || || ||||| ||||| ||| ||
Sbjct 8100 AAGATTTCTTTTCAACCAAATAGTGGAGCACAAGGAGAATATGCCGGACTTAGAGCCATT 8041
Query 159352 CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG--AGT 159409
| ||| ||| || | || | || | ||| | ||| | || ||| |||
Sbjct 8040 CGCCGATATCATGAATTTAAAAATGAAGGAAACCGTAATATCTGTCTAATTCCAATAAGT 7981
Query 159410 CAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCA 159469
|| |||||||||||||| || || || ||||| || |||||||| | | | |
Sbjct 7980 --GCCCATGGAACTAATCCAGCTTCCGCTCAAATGGCTGGAATGAAAGTAGAACCGATTA 7923
Query 159470 -AGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGA-AAGCAATCATGAA 159527
| | || | ||| |||| || ||||| || |||| | ||| |||| || ||||
Sbjct 7922 GAATTTG-TACTGACGGCAGTATTGACATGAACCATCTTAA--AGACAAGCTTTC-TGAA 7867
Query 159528 TACATTTGAACTG------TCATGTATTATGATTACATATCCATCTACACATGGTGTATT 159581
| ||||| | || || ||||||| ||||| || || || || || ||
Sbjct 7866 T----TTGAAAAGGATTTATCTTGCCTTATGATAACATACCCTTCAACTATGGGAGTGTT 7811
Query 159582 TGAAACAAACATCAGACAGATATGTAAGATT--GTTCATGAGAATGGTGGTCAGGTATAT 159639
|||| || | | | | ||||| | |||| ||||| | ||||||| || || ||
Sbjct 7810 TGAAGAAACCGT--GTCGGATATTTGCGATTTGGTTCACAAACATGGTGGGCAAGTTTAC 7753
Query 159640 CTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCA 159699
| ||||| || ||| | |||||||| || ||| || || ||||||||||
Sbjct 7752 TTAGATGGAGCGAATATGAATGCACAAGTCGGTTTATGTCGTCCTGGTGACTATGGAAGT 7693
Query 159700 GATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCT 159759
|| |||| ||| | ||||||||||| ||||| |||||||| ||||| |||||||||||
Sbjct 7692 GACGTATCCCATTTGAACTTACATAAAACATTTTGTATTCCTCATGGTGGTGGAGGTCCC 7633
Query 159760 GGCGTAGGTCCTATTGGTGTAGCAAAACATCT 159791
|| | || || ||||||||| | |||||||
Sbjct 7632 GGAATGGGACCAATTGGTGTAAAAGAACATCT 7601
Score = 107 bits (118), Expect = 2e-18
Identities = 178/257 (69%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
||||| || || ||||| | || || || ||||| ||||||| ||| |||||| | |
Sbjct 8976 CAAAGATTAGGCGTTCCTTTAGGTTATGGTGGTCCACATGCTGGATTTTTTGCATGTAGA 8917
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562
| || | | || || ||| |||| | ||| || ||||| || ||
Sbjct 8916 CAGAATTTAGTTCGTTTAATGCCAGGCCGAATGATTGGTGTAACAAGAGATATTGACGGA 8857
Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622
|| | ||||| | ||||| |||| |||||||| || ||||| | |||| ||||||
Sbjct 8856 CATGATGCATATCGTCTAGCATTACAAACTAGAGAACAACATATTCGTCGAGATAAAGCA 8797
Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682
|| || ||||| ||||| || ||||| || || ||||||||||| | | ||||| |
Sbjct 8796 ACTAGCAACATTTGCACTGCTCAAGCCCTTCTTGCTAATATGTCAGCTATGTATGCCATA 8737
Query 158683 TATCATGGTGCAGATGG 158699
||||||||| |||| ||
Sbjct 8736 TATCATGGTCCAGAAGG 8720
Score = 96.9 bits (106), Expect = 4e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022
|||||||| || ||||| ||||| | || ||| | || ||| |||| || |||||||||
Sbjct 9573 TACACTCCATACCAAGCAGAGATTGCACAAGGACGTTTAGAATCTTTGTTGAATTACCAA 9514
Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082
|| || | | ||| | || || || || || || || ||| |||||||||||| |
Sbjct 9513 ACTCTGGTATCTGAAATGACTGGGTTAGATATGGCTAATGCTTCTTTATTAGATGAAGGA 9454
Query 158083 ACTGCAGCAGCAGAAGCAATG 158103
|| ||||| ||||||||||||
Sbjct 9453 ACAGCAGCGGCAGAAGCAATG 9433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587071403791840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |