Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq19915 129 7e-25 >seq19915 Length=15128 Score = 129 bits (142), Expect = 7e-25 Identities = 378/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Minus Query 159232 GGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGAT 159291 || ||||| ||||| | | || ||| | ||| || ||||| || ||||| | || Sbjct 8160 GGATATCATAAAATGTTTAAAGAATTAGAAAAAGATTTGTGTGAAATAACAGGCTACGAC 8101 Query 159292 TCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATC 159351 || || || ||||| || ||| |||| || || ||||| ||||| ||| || Sbjct 8100 AAGATTTCTTTTCAACCAAATAGTGGAGCACAAGGAGAATATGCCGGACTTAGAGCCATT 8041 Query 159352 CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG--AGT 159409 | ||| ||| || | || | || | ||| | ||| | || ||| ||| Sbjct 8040 CGCCGATATCATGAATTTAAAAATGAAGGAAACCGTAATATCTGTCTAATTCCAATAAGT 7981 Query 159410 CAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCA 159469 || |||||||||||||| || || || ||||| || |||||||| | | | | Sbjct 7980 --GCCCATGGAACTAATCCAGCTTCCGCTCAAATGGCTGGAATGAAAGTAGAACCGATTA 7923 Query 159470 -AGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGA-AAGCAATCATGAA 159527 | | || | ||| |||| || ||||| || |||| | ||| |||| || |||| Sbjct 7922 GAATTTG-TACTGACGGCAGTATTGACATGAACCATCTTAA--AGACAAGCTTTC-TGAA 7867 Query 159528 TACATTTGAACTG------TCATGTATTATGATTACATATCCATCTACACATGGTGTATT 159581 | ||||| | || || ||||||| ||||| || || || || || || Sbjct 7866 T----TTGAAAAGGATTTATCTTGCCTTATGATAACATACCCTTCAACTATGGGAGTGTT 7811 Query 159582 TGAAACAAACATCAGACAGATATGTAAGATT--GTTCATGAGAATGGTGGTCAGGTATAT 159639 |||| || | | | | ||||| | |||| ||||| | ||||||| || || || Sbjct 7810 TGAAGAAACCGT--GTCGGATATTTGCGATTTGGTTCACAAACATGGTGGGCAAGTTTAC 7753 Query 159640 CTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCA 159699 | ||||| || ||| | |||||||| || ||| || || |||||||||| Sbjct 7752 TTAGATGGAGCGAATATGAATGCACAAGTCGGTTTATGTCGTCCTGGTGACTATGGAAGT 7693 Query 159700 GATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCT 159759 || |||| ||| | ||||||||||| ||||| |||||||| ||||| ||||||||||| Sbjct 7692 GACGTATCCCATTTGAACTTACATAAAACATTTTGTATTCCTCATGGTGGTGGAGGTCCC 7633 Query 159760 GGCGTAGGTCCTATTGGTGTAGCAAAACATCT 159791 || | || || ||||||||| | ||||||| Sbjct 7632 GGAATGGGACCAATTGGTGTAAAAGAACATCT 7601 Score = 107 bits (118), Expect = 2e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| || || ||||| | || || || ||||| ||||||| ||| |||||| | | Sbjct 8976 CAAAGATTAGGCGTTCCTTTAGGTTATGGTGGTCCACATGCTGGATTTTTTGCATGTAGA 8917 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 | || | | || || ||| |||| | ||| || ||||| || || Sbjct 8916 CAGAATTTAGTTCGTTTAATGCCAGGCCGAATGATTGGTGTAACAAGAGATATTGACGGA 8857 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 || | ||||| | ||||| |||| |||||||| || ||||| | |||| |||||| Sbjct 8856 CATGATGCATATCGTCTAGCATTACAAACTAGAGAACAACATATTCGTCGAGATAAAGCA 8797 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 || || ||||| ||||| || ||||| || || ||||||||||| | | ||||| | Sbjct 8796 ACTAGCAACATTTGCACTGCTCAAGCCCTTCTTGCTAATATGTCAGCTATGTATGCCATA 8737 Query 158683 TATCATGGTGCAGATGG 158699 ||||||||| |||| || Sbjct 8736 TATCATGGTCCAGAAGG 8720 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 |||||||| || ||||| ||||| | || ||| | || ||| |||| || ||||||||| Sbjct 9573 TACACTCCATACCAAGCAGAGATTGCACAAGGACGTTTAGAATCTTTGTTGAATTACCAA 9514 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || || | | ||| | || || || || || || || ||| |||||||||||| | Sbjct 9513 ACTCTGGTATCTGAAATGACTGGGTTAGATATGGCTAATGCTTCTTTATTAGATGAAGGA 9454 Query 158083 ACTGCAGCAGCAGAAGCAATG 158103 || ||||| |||||||||||| Sbjct 9453 ACAGCAGCGGCAGAAGCAATG 9433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587071403791840