Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_015293.1
Length=30651
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 95.1 2e-15
>seq30817
Length=4284
Score = 95.1 bits (104), Expect = 2e-15
Identities = 191/281 (68%), Gaps = 2/281 (1%)
Strand=Plus/Minus
Query 2001 ACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTT 2060
||||| | ||| || || || |||||||| |||||| |||||| || |||| |
Sbjct 340 ACAACCACTTCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGT 281
Query 2061 AACTTGCCTTCAATGTATAGCTTACTACCCTTACGT-ACATACTCGCCGATTATTTCAGC 2119
||| ||||| || || | ||| | |||| | | || || || | ||||||
Sbjct 280 AACGAACCTTCGATATAGA-CTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGC 222
Query 2120 TAACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCAGTGCT 2179
||| || || |||| ||| | | |||||| ||||||| ||| ||| || ||
Sbjct 221 TAATTTGCCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTG 162
Query 2180 TTTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCGTTAGG 2239
|| || ||| |||| |||||| ||||| ||||||||||| || ||||||||
Sbjct 161 CTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGG 102
Query 2240 TATGTAACGAATTTCTGGATCTTGACCAGCATTACCAATAA 2280
|| ||||| ||||| |||||||| || ||||| ||||
Sbjct 101 CATATAACGGATTTCAGGATCTTGCCCTAGGTTACCGATAA 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97806539889564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |