Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 136 9e-27
seq34035 123 6e-23
seq98857 91.5 3e-13
seq8255 91.5 3e-13
>seq116239
Length=11340
Score = 136 bits (150), Expect = 9e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||| ||||| || |||||||| |||||||| | | || || ||||| || | |||
Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGC 4635
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || || || | |||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 4636 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 4695
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || ||||| ||||| || || || || | |||| || ||||| ||
Sbjct 4696 GCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTT 4755
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
||||||||||| || | |||||||
Sbjct 4756 AAAGTTTTTACAAAAATCTGCATTT 4780
>seq34035
Length=19351
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||||||||| || || ||||| | | |||| ||||| || || || |||||
Sbjct 10554 AGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTTGTTTACC 10495
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || | |||||||| ||||||||||| |||||||| ||||| || || ||
Sbjct 10494 AGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTT 10435
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
|| || ||||| || || || ||| || ||||| || | ||||| ||||| | |||
Sbjct 10434 AACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTGTAAGAGT 10375
Query 195123 TTTTACGAACACTTGCAT 195140
||| || || | |||||
Sbjct 10374 TTTAACAAATATCTGCAT 10357
>seq98857
Length=3708
Score = 91.5 bits (100), Expect = 3e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044
||||| ||| || || ||| ||||||| | || |||||| ||||||||||| || || ||
Sbjct 23 ATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTT 82
Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104
|||||| || ||| ||| || || ||||| || || || ||| || || ||||| |
Sbjct 83 GTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGAT 142
Query 195105 CGTCTTTCCTGTCAAAGT 195122
|| ||||| || || ||
Sbjct 143 TGTTTTTCCAGTTAATGT 160
>seq8255
Length=4873
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || || || |||||||| ||||||||| || || | ||||||| | ||
Sbjct 570 GTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTCAATTG 511
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || ||||| || | | ||||||||||| || | | |||||||||| |||||||
Sbjct 510 TTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGAATTTT 451
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || | || | ||||||||| | ||| ||||| | || | ||||| || ||
Sbjct 450 AGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTACCAGT 391
Query 195117 CAA 195119
|||
Sbjct 390 CAA 388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1107586794732498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |