Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq116239 136 9e-27 seq34035 123 6e-23 seq98857 91.5 3e-13 seq8255 91.5 3e-13 >seq116239 Length=11340 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| || |||||||| |||||||| | | || || ||||| || | ||| Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGC 4635 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | |||||||| ||||| ||||||||||| ||||||||||| ||| Sbjct 4636 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 4695 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| ||||| || || || || | |||| || ||||| || Sbjct 4696 GCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTT 4755 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 ||||||||||| || | ||||||| Sbjct 4756 AAAGTTTTTACAAAAATCTGCATTT 4780 >seq34035 Length=19351 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||||||||| || || ||||| | | |||| ||||| || || || ||||| Sbjct 10554 AGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTTGTTTACC 10495 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | |||||||| ||||||||||| |||||||| ||||| || || || Sbjct 10494 AGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTT 10435 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || ||||| || || || ||| || ||||| || | ||||| ||||| | ||| Sbjct 10434 AACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTGTAAGAGT 10375 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | ||||| Sbjct 10374 TTTAACAAATATCTGCAT 10357 >seq98857 Length=3708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| ||| || || ||| ||||||| | || |||||| ||||||||||| || || || Sbjct 23 ATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTT 82 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| || ||| ||| || || ||||| || || || ||| || || ||||| | Sbjct 83 GTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGAT 142 Query 195105 CGTCTTTCCTGTCAAAGT 195122 || ||||| || || || Sbjct 143 TGTTTTTCCAGTTAATGT 160 >seq8255 Length=4873 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || |||||||| ||||||||| || || | ||||||| | || Sbjct 570 GTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTCAATTG 511 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | | ||||||||||| || | | |||||||||| ||||||| Sbjct 510 TTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGAATTTT 451 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || | || | ||||||||| | ||| ||||| | || | ||||| || || Sbjct 450 AGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTACCAGT 391 Query 195117 CAA 195119 ||| Sbjct 390 CAA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107586794732498