Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 836 0.0
seq50502 210 2e-49
seq3775 102 9e-17
>seq69808
Length=9325
Score = 836 bits (926), Expect = 0.0
Identities = 1313/1880 (70%), Gaps = 24/1880 (1%)
Strand=Plus/Minus
Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| || |||||||| | || | || |||| ||||||||||||||||||||| ||
Sbjct 8280 TTTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCC 8221
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
||| ||||||||||| |||||||||| |||||||| |||| | | |||| | ||
Sbjct 8220 AGTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGG 8161
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
||| | | ||||||||||| ||||||||||||||||| ||||| || | ||| || ||
Sbjct 8160 TTCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGC 8101
Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210
||| | | | ||| || || ||||| ||||||||||| | | | ||
Sbjct 8100 CATTTGCAT--TTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATT 8043
Query 47211 TCTTCTGGGAGATTAGTATTTT---GAATAGATCCTCCgttttctataattttgtttttt 47267
|| ||| | |||| | ||| | ||||| || | ||| | || ||| | |||||
Sbjct 8042 GATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTC 7983
Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAAT 47326
| |||| ||| | | |||| ||||| |||||| |||| | ||||||| |
Sbjct 7982 ATATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAA-ATGATTAACTAC 7924
Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386
|||||| ||||||| ||| | ||| ||| ||||| |||||| || || | ||
Sbjct 7923 AACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGA 7864
Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446
||| ||||| || |||||||| || ||||||||||| ||||| | ||||| ||| ||
Sbjct 7863 TTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGA 7804
Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506
||||| | |||| || || || | ||||||| ||| ||||| |
Sbjct 7803 ATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGT 7744
Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566
||| |||||| | |||||||||||| || |||| || | || || |||| |||
Sbjct 7743 TGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCATA 7684
Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626
||||| ||| | ||| |||| || ||| | ||| ||||| || || ||||||| ||||||
Sbjct 7683 TGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAATA 7624
Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686
|||||||||||||||| | |||| ||| ||||||| |||| | || ||
Sbjct 7623 AATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAACG 7564
Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746
|||| ||| || || ||||| || |||||||||||||||| ||||
Sbjct 7563 CATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGAAA 7504
Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806
||| || | ||||||||||| ||||| | || ||||| ||||||||||| | |
Sbjct 7503 ATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAATT 7444
Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA---T 47863
|| |||| | | ||| ||||||||| | || |||| | |
Sbjct 7443 TCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTGCTGT 7384
Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923
||||||| |||| | || || || |||| |||||| ||||||| |||| ||| |
Sbjct 7383 AACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTGGTGCTGA 7324
Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983
||||| | ||||| | ||| ||||||| |||||| || || || | ||||| |||||
Sbjct 7323 ATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTTGATT 7264
Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043
| | ||||| || || || || | |||| | || || |||||||| | |||||
Sbjct 7263 ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTTGAGA 7204
Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG 48103
|||||| |||| ||| | | | || || || |||| | ||||
Sbjct 7203 TTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGACCTTCATT 7144
Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163
||| |||||| |||| | | ||||||| || || | |||||| ||| ||||||||
Sbjct 7143 TTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAATAAACCAGGACA 7084
Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223
|| || |||||||| |||||||||| |||||| || || | ||||||||| |||
Sbjct 7083 TTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATAAATAAATC 7024
Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283
||| ||||| | || |||||||||||||| | ||||||| | ||| |||| |
Sbjct 7023 TGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTT 6964
Query 48284 TTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342
||| || || || ||| || | ||||| |||||||||||||||||||| || || | |
Sbjct 6963 TTTTAAATTTAA-AAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATAGCAAATG 6905
Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402
||||||||||||||||||| |||||||| | |||||| ||| ||| ||| | || | ||
Sbjct 6904 CACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAGACACGTA 6845
Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462
||||||| || | |||||||||||||||||| || || | ||| | | || | | |
Sbjct 6844 ACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCTTTTGAAC 6785
Query 48463 TTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518
||| || ||| ||| || || |||||||| || |||| ||||| | || ||
Sbjct 6784 GTATGCAATGTAC--ATT--TATTCCAATACCACCAGCATTTTTTGATATCATTGCGCAT 6729
Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578
||| || | | | | || ||||| || |||||| | ||| |||||| ||||||
Sbjct 6728 TGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAAAAAACAT 6669
Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638
|| | ||| ||| ||| ||| ||| | |||||||||||| ||||||||| ||||
Sbjct 6668 GATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATGAGTAAAA 6609
Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTAT 48697
| |||||||| | ||||| ||||||||||||| ||| ||| | || | |||||
Sbjct 6608 TAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACCG-TGTAT 6550
Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757
||| | | |||||||||||||||| ||| ||||||||| ||||||| ||| |||||
Sbjct 6549 ACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATTAATTTT 6490
Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
|| | ||||||| |||| |||||||||||||||||||| || || ||| || |||
Sbjct 6489 TAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATCACGATC 6430
Query 48818 ATTAATAATTGATGAATTTA 48837
|| |||||||| |||||||
Sbjct 6429 ATAAATAATTGCCGAATTTA 6410
>seq50502
Length=11567
Score = 210 bits (232), Expect = 2e-49
Identities = 214/279 (77%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274
||| | || |||||| | ||| | || || || | ||||||||||||||||||| |||
Sbjct 5103 CTCTTTTGAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATT 5162
Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334
||| || || || ||||| || |||||||| | |||||| || || |||||||| ||
Sbjct 5163 TTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACC 5222
Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394
||||| ||| || | ||||||||| || || |||||| ||||||||||||||||| ||
Sbjct 5223 AAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAAC 5282
Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGA 19454
|||| ||||||||| ||| | |||||| | | ||| | | |||||||| ||
Sbjct 5283 ATGTGAAATAAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGA 5342
Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|||||| |||||||||||||||||||| || || || ||
Sbjct 5343 TAAATCAACTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381
Score = 197 bits (218), Expect = 2e-45
Identities = 232/314 (74%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA 18951
||||||||||| ||||| | ||||| || | | || | || | ||| ||
Sbjct 4707 ACTGCCTCTGAGATAATTTCAATGACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTG 4766
Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011
||||| |||||||||||||||||||| ||||| || || | || |||||||| |||
Sbjct 4767 AACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAA 4826
Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071
||||||||||||||||| | ||||| |||||||||||| ||||||| ||||| ||||
Sbjct 4827 AATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCA 4886
Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131
|||||| || ||||| || || |||||||||| | |||||| || || |||||
Sbjct 4887 CTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGAT 4946
Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191
||| | ||||||| | |||||||| || || ||||| ||||| || | ||| ||
Sbjct 4947 TTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCA 5006
Query 19192 ATAGAATTAAATAG 19205
|||| ||| || ||
Sbjct 5007 ATAGCATTGAAAAG 5020
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 18774 TCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833
||| ||||| |||||| | ||| || ||||||| ||||||| ||| | | |||
Sbjct 4410 TCCCAATTCACATAGTAAACGATCGGCAACAAATTCAATATATTGAGACATTAATTTACA 4469
Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893
||||||||| ||||| || || |||| || ||||| | |||||| ||||| || |||||
Sbjct 4470 ATTCATTCCAATTAAATTGACTGGTAAAGCTTCTGTTAAAAATTCCTGTTCAATTTTTAC 4529
Query 18894 TGCC 18897
||||
Sbjct 4530 TGCC 4533
Score = 86.0 bits (94), Expect = 7e-12
Identities = 113/155 (73%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCAT--TACTCCCATT 18669
||||||||| |||| || | ||| ||| ||| || || || || ||||||||||
Sbjct 4153 TTAAAAATCTGCATCTAATGTAAAGACATTGTCTG--TTTGATTTGATGTTACTCCCATT 4210
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|||||||| || ||||| | |||||||| || || ||||| || || | || |||
Sbjct 4211 TTTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGG 4270
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAT 18764
||||||||| ||| ||||||| | ||| || ||
Sbjct 4271 TCCATAAAACTAAAAGGATTTTCTGAATTGTAAAT 4305
>seq3775
Length=22988
Score = 102 bits (112), Expect = 9e-17
Identities = 162/231 (70%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 137159 TTAGAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGG 137218
|||||||||||||| | ||| |||| || || |||| |||||||||||| |||
Sbjct 6719 TTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTGG 6660
Query 137219 TTAAAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTA 137278
||||| || || || |||||| | | | || | || ||| || || || ||
Sbjct 6659 TTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGTT 6600
Query 137279 GTATTAGGTGCTTATTATGGTAAAGGATCAAAGGGTGGTATAATGGCTGTATTTTTAATG 137338
|| ||||| || | ||||||| ||| ||| ||||| || | | |||| ||||||
Sbjct 6599 GTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTAATG 6540
Query 137339 GGATGTTATGATGATAATGATTGTAAATGGAAAACTGTTACAAAATGTTCA 137389
|||||||||||| ||| || ||||||||| || |||||| |||||
Sbjct 6539 GGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAA-GTTCA 6490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561172228370160
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