Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq69808 836 0.0 seq50502 210 2e-49 seq3775 102 9e-17 >seq69808 Length=9325 Score = 836 bits (926), Expect = 0.0 Identities = 1313/1880 (70%), Gaps = 24/1880 (1%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||| | || | || |||| ||||||||||||||||||||| || Sbjct 8280 TTTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCC 8221 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| ||||||||||| |||||||||| |||||||| |||| | | |||| | || Sbjct 8220 AGTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGG 8161 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | ||||||||||| ||||||||||||||||| ||||| || | ||| || || Sbjct 8160 TTCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGC 8101 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | | | ||| || || ||||| ||||||||||| | | | || Sbjct 8100 CATTTGCAT--TTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATT 8043 Query 47211 TCTTCTGGGAGATTAGTATTTT---GAATAGATCCTCCgttttctataattttgtttttt 47267 || ||| | |||| | ||| | ||||| || | ||| | || ||| | ||||| Sbjct 8042 GATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTC 7983 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAAT 47326 | |||| ||| | | |||| ||||| |||||| |||| | ||||||| | Sbjct 7982 ATATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAA-ATGATTAACTAC 7924 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||| ||||||| ||| | ||| ||| ||||| |||||| || || | || Sbjct 7923 AACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGA 7864 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||| ||||| || |||||||| || ||||||||||| ||||| | ||||| ||| || Sbjct 7863 TTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGA 7804 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||||| | |||| || || || | ||||||| ||| ||||| | Sbjct 7803 ATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGT 7744 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| |||||| | |||||||||||| || |||| || | || || |||| ||| Sbjct 7743 TGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCATA 7684 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||||| ||| | ||| |||| || ||| | ||| ||||| || || ||||||| |||||| Sbjct 7683 TGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAATA 7624 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686 |||||||||||||||| | |||| ||| ||||||| |||| | || || Sbjct 7623 AATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAACG 7564 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 |||| ||| || || ||||| || |||||||||||||||| |||| Sbjct 7563 CATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGAAA 7504 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || | ||||||||||| ||||| | || ||||| ||||||||||| | | Sbjct 7503 ATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAATT 7444 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA---T 47863 || |||| | | ||| ||||||||| | || |||| | | Sbjct 7443 TCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTGCTGT 7384 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| |||| | || || || |||| |||||| ||||||| |||| ||| | Sbjct 7383 AACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTGGTGCTGA 7324 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | ||||| | ||| ||||||| |||||| || || || | ||||| ||||| Sbjct 7323 ATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTTGATT 7264 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | ||||| || || || || | |||| | || || |||||||| | ||||| Sbjct 7263 ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTTGAGA 7204 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG 48103 |||||| |||| ||| | | | || || || |||| | |||| Sbjct 7203 TTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGACCTTCATT 7144 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||| |||||| |||| | | ||||||| || || | |||||| ||| |||||||| Sbjct 7143 TTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAATAAACCAGGACA 7084 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 || || |||||||| |||||||||| |||||| || || | ||||||||| ||| Sbjct 7083 TTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATAAATAAATC 7024 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 ||| ||||| | || |||||||||||||| | ||||||| | ||| |||| | Sbjct 7023 TGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTT 6964 Query 48284 TTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 ||| || || || ||| || | ||||| |||||||||||||||||||| || || | | Sbjct 6963 TTTTAAATTTAA-AAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATAGCAAATG 6905 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 ||||||||||||||||||| |||||||| | |||||| ||| ||| ||| | || | || Sbjct 6904 CACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAGACACGTA 6845 Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462 ||||||| || | |||||||||||||||||| || || | ||| | | || | | | Sbjct 6844 ACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCTTTTGAAC 6785 Query 48463 TTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 ||| || ||| ||| || || |||||||| || |||| ||||| | || || Sbjct 6784 GTATGCAATGTAC--ATT--TATTCCAATACCACCAGCATTTTTTGATATCATTGCGCAT 6729 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 ||| || | | | | || ||||| || |||||| | ||| |||||| |||||| Sbjct 6728 TGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAAAAAACAT 6669 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || | ||| ||| ||| ||| ||| | |||||||||||| ||||||||| |||| Sbjct 6668 GATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATGAGTAAAA 6609 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTAT 48697 | |||||||| | ||||| ||||||||||||| ||| ||| | || | ||||| Sbjct 6608 TAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACCG-TGTAT 6550 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 ||| | | |||||||||||||||| ||| ||||||||| ||||||| ||| ||||| Sbjct 6549 ACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATTAATTTT 6490 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 || | ||||||| |||| |||||||||||||||||||| || || ||| || ||| Sbjct 6489 TAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATCACGATC 6430 Query 48818 ATTAATAATTGATGAATTTA 48837 || |||||||| ||||||| Sbjct 6429 ATAAATAATTGCCGAATTTA 6410 >seq50502 Length=11567 Score = 210 bits (232), Expect = 2e-49 Identities = 214/279 (77%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 ||| | || |||||| | ||| | || || || | ||||||||||||||||||| ||| Sbjct 5103 CTCTTTTGAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATT 5162 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 ||| || || || ||||| || |||||||| | |||||| || || |||||||| || Sbjct 5163 TTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACC 5222 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 ||||| ||| || | ||||||||| || || |||||| ||||||||||||||||| || Sbjct 5223 AAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAAC 5282 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGA 19454 |||| ||||||||| ||| | |||||| | | ||| | | |||||||| || Sbjct 5283 ATGTGAAATAAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGA 5342 Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 |||||| |||||||||||||||||||| || || || || Sbjct 5343 TAAATCAACTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381 Score = 197 bits (218), Expect = 2e-45 Identities = 232/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA 18951 ||||||||||| ||||| | ||||| || | | || | || | ||| || Sbjct 4707 ACTGCCTCTGAGATAATTTCAATGACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTG 4766 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||||| |||||||||||||||||||| ||||| || || | || |||||||| ||| Sbjct 4767 AACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAA 4826 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||||||||||||||| | ||||| |||||||||||| ||||||| ||||| |||| Sbjct 4827 AATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCA 4886 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||| || ||||| || || |||||||||| | |||||| || || ||||| Sbjct 4887 CTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGAT 4946 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 ||| | ||||||| | |||||||| || || ||||| ||||| || | ||| || Sbjct 4947 TTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCA 5006 Query 19192 ATAGAATTAAATAG 19205 |||| ||| || || Sbjct 5007 ATAGCATTGAAAAG 5020 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18774 TCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833 ||| ||||| |||||| | ||| || ||||||| ||||||| ||| | | ||| Sbjct 4410 TCCCAATTCACATAGTAAACGATCGGCAACAAATTCAATATATTGAGACATTAATTTACA 4469 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893 ||||||||| ||||| || || |||| || ||||| | |||||| ||||| || ||||| Sbjct 4470 ATTCATTCCAATTAAATTGACTGGTAAAGCTTCTGTTAAAAATTCCTGTTCAATTTTTAC 4529 Query 18894 TGCC 18897 |||| Sbjct 4530 TGCC 4533 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCAT--TACTCCCATT 18669 ||||||||| |||| || | ||| ||| ||| || || || || |||||||||| Sbjct 4153 TTAAAAATCTGCATCTAATGTAAAGACATTGTCTG--TTTGATTTGATGTTACTCCCATT 4210 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || ||||| | |||||||| || || ||||| || || | || ||| Sbjct 4211 TTTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGG 4270 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 ||||||||| ||| ||||||| | ||| || || Sbjct 4271 TCCATAAAACTAAAAGGATTTTCTGAATTGTAAAT 4305 >seq3775 Length=22988 Score = 102 bits (112), Expect = 9e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 137159 TTAGAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGG 137218 |||||||||||||| | ||| |||| || || |||| |||||||||||| ||| Sbjct 6719 TTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTGG 6660 Query 137219 TTAAAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTA 137278 ||||| || || || |||||| | | | || | || ||| || || || || Sbjct 6659 TTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGTT 6600 Query 137279 GTATTAGGTGCTTATTATGGTAAAGGATCAAAGGGTGGTATAATGGCTGTATTTTTAATG 137338 || ||||| || | ||||||| ||| ||| ||||| || | | |||| |||||| Sbjct 6599 GTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTAATG 6540 Query 137339 GGATGTTATGATGATAATGATTGTAAATGGAAAACTGTTACAAAATGTTCA 137389 |||||||||||| ||| || ||||||||| || |||||| ||||| Sbjct 6539 GGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAA-GTTCA 6490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561172228370160