Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 178 2e-39
>seq50502
Length=11567
Score = 178 bits (196), Expect = 2e-39
Identities = 194/258 (75%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498
|||| ||||||| || ||||||| | || |||||||| || |||| ||||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558
|| ||||| ||||||||||| | ||||||| | ||| || || | | ||| | |
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618
| | | |||||||| || || |||||| |||||||| || || | ||||| | ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 37678
|||||| | ||| || | | |||||||| ||| | | ||||||||||||||||||||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 37679 TTCATCAACGGTCCAAAA 37696
||| ||||| ||||||||
Sbjct 5352 TTCTTCAACTGTCCAAAA 5369
Score = 167 bits (184), Expect = 3e-36
Identities = 197/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 37157 TAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAA 37216
||||| || |||| ||||||||||||||||||||| | |||||||| | || ||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276
|||||| ||||| ||||| || ||||||| |||| |||||| | ||||||||| |||||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 37277 AAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA 37336
|||| |||| ||||||||| |||||||| || ||||| || | || | | ||||||
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 37337 AGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396
| | | | | | | ||||||| | | |||||| || ||| |||||||||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAA 37423
| ||||||||| || || || || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591329896555760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |