Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq50502 178 2e-39 >seq50502 Length=11567 Score = 178 bits (196), Expect = 2e-39 Identities = 194/258 (75%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| ||||||| || ||||||| | || |||||||| || |||| ||||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 || ||||| ||||||||||| | ||||||| | ||| || || | | ||| | | Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | | |||||||| || || |||||| |||||||| || || | ||||| | || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 37678 |||||| | ||| || | | |||||||| ||| | | |||||||||||||||||||| Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 37679 TTCATCAACGGTCCAAAA 37696 ||| ||||| |||||||| Sbjct 5352 TTCTTCAACTGTCCAAAA 5369 Score = 167 bits (184), Expect = 3e-36 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 37157 TAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAA 37216 ||||| || |||| ||||||||||||||||||||| | |||||||| | || || Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276 |||||| ||||| ||||| || ||||||| |||| |||||| | ||||||||| ||||| Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 37277 AAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA 37336 |||| |||| ||||||||| |||||||| || ||||| || | || | | |||||| Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 37337 AGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | | | | | | | ||||||| | | |||||| || ||| ||||||||| Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAA 37423 | ||||||||| || || || || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591329896555760