Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq30817 154 5e-33 >seq30817 Length=4284 Score = 154 bits (170), Expect = 5e-33 Identities = 229/324 (71%), Gaps = 3/324 (1%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTC---AACGCC 26006 ||| ||||| | ||||||| || || || | ||| || || ||||| || | ||| Sbjct 365 CATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCTTGACCGCT 306 Query 26007 GTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | | | ||| || || |||| | || || || || || ||||| ||||| || Sbjct 305 TTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAGCCTTTTTT 246 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 |||||| || || || | || |||| ||||| || | || || || |||||||| || Sbjct 245 CAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGCCATTCGGT 186 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 ||| | | || ||||| ||||| || ||| ||||| || || || | || | Sbjct 185 TTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAG 126 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 ||| || || || ||||| |||||||| |||||||| || ||||| | ||| |||||||| Sbjct 125 GTTTGCCACCGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTGCCCTAGGTTACC 66 Query 26247 GACAAGGATTACTTTATTTACGCC 26270 || ||| ||||||||||||||||| Sbjct 65 GATAAGAATTACTTTATTTACGCC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159564630114804