Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq101259 132 1e-26 >seq101259 Length=2429 Score = 132 bits (146), Expect = 1e-26 Identities = 184/255 (72%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 1603 AACAGCATTTCTGGACCCTTATGCCCCATCTGACCTGCAAGCCAGAAAAGGTTTACTCCC 1662 |||| |||||| || |||||||||||||| || || || ||||| || || || | || Sbjct 782 AACAACATTTCAGGCCCCTTATGCCCCATTTGTCCAGCTAGCCAAAACAGATTAGCACCT 841 Query 1663 TGGCTGATGTGTTTGGTGGCGAATGTATGGCGGGTCTGGTAGGGATTACGGTACCGAACG 1722 |||||||| ||| | ||||| || ||||| | || || || ||||| || || | | Sbjct 842 TGGCTGATATGTCTCGTGGCAAAGGTATGCCTAGTTTGATATGGATTTCGATATCTGATA 901 Query 1723 CCAGCTTTTTTCAGGGTTGGCACCCATGCtttttttCGGATAGCGTCTGCGTTCGCCCAA 1782 || ||||| || || ||||||||||||||||| |||| ||| || || || |||| | Sbjct 902 CCTGCTTTCTTTAGCGTTGGCACCCATGCTTTCTTTCTGATTGCATCGGCACCTGCCC-A 960 Query 1783 GGCTCT-CCCGTTTTCGGGTCGCTGAATATGAACTCGCTTTTCATAAAGGTGTATTGTTT 1841 |||| | ||||||||||| || || | || ||||| || ||| |||| || Sbjct 961 GGCTTTATTTGTTTTCGGGTCTTCAAAAATCACATCATCTTTCAGGAACGTGAATTGCTT 1020 Query 1842 CTGCGCCAGCAGGGC 1856 |||| | |||||| Sbjct 1021 CTGCTCATTCAGGGC 1035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127592917291008