Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq116239 143 2e-29 seq28819 93.3 3e-14 >seq116239 Length=11340 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||| || ||| || |||||||| |||||||| || Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | || ||||| ||||| || ||||| |||| || |||||||| | ||| Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||||| ||| ||| | | | || |||| ||| ||| Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||| || ||||||||||||||||||||||| Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 >seq28819 Length=13211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACC 9060 || ||||| ||||| |||||||| || || | || ||| || | | | ||||| Sbjct 8407 CCAGTTGAACCAAAACCTCCCTCACCACGTTCAGTTTCATTCAAAGTTTTCTCTTCTACA 8348 Query 9061 AGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACG 9120 ||| |||||||| ||| ||| ||||| ||||| ||||| | || || || || Sbjct 8347 AGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCACGTTTTACT 8288 Query 9121 ACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCA 9180 ||| || | || |||||||| || | || || || | || || | ||||||||| Sbjct 8287 TGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGATAATCCTCA 8228 Query 9181 TCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCG 9240 || | ||||| || || || || ||||| | || || || |||||||| || || || Sbjct 8227 TCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAACGTGGTGCT 8168 Query 9241 ATTCGACCGTA 9251 || || || || Sbjct 8167 ATACGTCCATA 8157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380318759011962