Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 143 2e-29
seq28819 93.3 3e-14
>seq116239
Length=11340
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | |||||||| || ||| || |||||||| |||||||| ||
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | | | || ||||| ||||| || ||||| |||| || |||||||| | |||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| |||||||| ||||||| ||| ||| | | | || |||| ||| |||
Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
>seq28819
Length=13211
Score = 93.3 bits (102), Expect = 3e-14
Identities = 171/251 (68%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACC 9060
|| ||||| ||||| |||||||| || || | || ||| || | | | |||||
Sbjct 8407 CCAGTTGAACCAAAACCTCCCTCACCACGTTCAGTTTCATTCAAAGTTTTCTCTTCTACA 8348
Query 9061 AGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACG 9120
||| |||||||| ||| ||| ||||| ||||| ||||| | || || || ||
Sbjct 8347 AGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCACGTTTTACT 8288
Query 9121 ACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCA 9180
||| || | || |||||||| || | || || || | || || | |||||||||
Sbjct 8287 TGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGATAATCCTCA 8228
Query 9181 TCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCG 9240
|| | ||||| || || || || ||||| | || || || |||||||| || || ||
Sbjct 8227 TCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAACGTGGTGCT 8168
Query 9241 ATTCGACCGTA 9251
|| || || ||
Sbjct 8167 ATACGTCCATA 8157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380318759011962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |