Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq31147 109 1e-19 seq7599 89.7 1e-13 >seq31147 Length=2015 Score = 109 bits (120), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 1453 GCATCTTCAAGATGTTCTGGTGCGAAATGGGCATAGACCATTGTCATTTTTATATCTGAG 1512 ||||| | |||||| ||||| |||||||||| ||| |||||||||||| ||||| | Sbjct 1434 GCATCATTAAGATGATCTGGGGCGAAATGGGAATACCGCATTGTCATTTTAATATCGGTA 1375 Query 1513 TGCCCTAAAATATCTCTC-AATACAAGAATATTTCCGCCATTCATCATAAAGTGACTAGC 1571 || || | || ||| | ||||| | ||||||||| || ||||||||||||| || Sbjct 1374 TGGCCAAGGAT-TCTTTGTAATACTAAAATATTTCCACCTGACATCATAAAGTGAGATGC 1316 Query 1572 GAATGTATGGCGCAATACATGCGTGCACTGGCCCTCTGGCAAGTCAATACCTGCTCTTTT 1631 || || ||||| || ||||| | | |||| || || || |||||||||| | || Sbjct 1315 AAAAGTGTGGCGTAAAACATGTGATGATTGGCGTTCAGGTAACTCAATACCTGTGCGCTT 1256 Query 1632 TACTGCA 1638 || |||| Sbjct 1255 TAATGCA 1249 >seq7599 Length=2269 Score = 89.7 bits (98), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 34049 TTTCACGTAACCCCTTGTTTTATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAA 34108 ||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||| || Sbjct 100 TTTCACGCAACCCCTTGATTTAATTGGTGGAGCTGGCGGGAGTTGAACCCGAGTCCGTAA 41 Query 34109 TT 34110 || Sbjct 40 TT 39 Score = 86.0 bits (94), Expect = 1e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 16 TTTCACGTAACCCCTTGTTATATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAA 75 ||||||| ||||||||| | || |||||||||||||||||||||||||||| ||||| || Sbjct 100 TTTCACGCAACCCCTTGATTTAATTGGTGGAGCTGGCGGGAGTTGAACCCGAGTCCGTAA 41 Query 76 TT 77 || Sbjct 40 TT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108880184003412