Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq31432 96.9 7e-16 seq31147 96.9 7e-16 >seq31432 Length=2868 Score = 96.9 bits (106), Expect = 7e-16 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 20132 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATTTTAGCTGCTAA 20191 |||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||| ||| Sbjct 2040 CTCATAATCGATTGGTCACTGGTTCAAGTCCAGTAGGGGCCACCAAATTTTAGCTGTTAA 1981 Query 20192 ATCAGC 20197 |||||| Sbjct 1980 ATCAGC 1975 >seq31147 Length=2015 Score = 96.9 bits (106), Expect = 7e-16 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 19783 TTGTTATGGGGCTTTTCGATCTGCACTCGAAAGAACAGGAATTGAATTACCAGCCGGTCA 19842 ||||||| || ||||| |||||| | | | ||||| ||||| ||||| | | || Sbjct 1228 TTGTTATTCTGCATTTCGTTCTGCATTAAAGCGCACAGGTATTGAGTTACCTGAACGCCA 1287 Query 19843 ACTTACCCACGTGCTGCGACATACGTTTGCAAGTCACTTTATGATGAACGGGGGAAACCT 19902 | | || || | || || || |||||| ||||||||||||| || ||||| | Sbjct 1288 ATCATCACATGTTTTACGCCACACTTTTGCATCTCACTTTATGATGTCAGGTGGAAATAT 1347 Query 19903 TTTAGTTTTGCAGCGGGTATTAGGCCATACAGACATAAAAATGACTATGCGATATGCTCA 19962 |||||| || || | | | |||||||| || || |||||||| ||||| ||| | || Sbjct 1348 TTTAGTATTACAAAGAATCCTTGGCCATACCGATATTAAAATGACAATGCGGTATTCCCA 1407 Query 19963 CTTTGCGCCCGATCATCT 19980 || || || |||||||| Sbjct 1408 TTTCGCCCCAGATCATCT 1425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94333645731528