Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 295 3e-75
>seq69808
Length=9325
Score = 295 bits (326), Expect = 3e-75
Identities = 1217/1888 (64%), Gaps = 90/1888 (5%)
Strand=Plus/Minus
Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724
|||||||| |||| | | |||||||| |||| | |||||||||||||||||| ||
Sbjct 8270 GTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAA 8211
Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784
|||||| || ||||||||||||||||||||| || |||| | ||| |
Sbjct 8210 CCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACA 8151
Query 24785 AACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATG 24844
| || | |||||| || || || | ||||||||| | | ||
Sbjct 8150 TGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCATTTGCATT 8091
Query 24845 ATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATA 24904
||||| | || || || || ||||||| ||| ||| ||| |||| |||
Sbjct 8090 TGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATTTTGGTATA 8031
Query 24905 CTTGCAATATTTTGAACTGATCCA---TTTTCTCTCAATAGATTCAATCTCATATTCGGT 24961
| |||| | ||| | || ||| ||| | | | | ||| | ||||||
Sbjct 8030 TTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATT---TTTCATATCATCA 7974
Query 24962 GTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCT 25021
||| | || || || | | |||| | | ||| | ||| | | || ||||||
Sbjct 7973 TCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAACAAATTCA 7914
Query 25022 CCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTAT 25079
||||| || || | | | || |||| ||||| || | || ||||| |||| ||||
Sbjct 7913 CCAGATAATACACGACGATGATAGATA--TTTGATGTATAAGGCTCAAATGATTCGTTAT 7856
Query 25080 TTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCA 25139
| ||||| ||||| | || ||||||||||||||| ||| ||||| | ||||||| |
Sbjct 7855 TACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGA 7796
Query 25140 AACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAACTCGA 25199
||||| || ||| | || ||| | || || ||||| | || | | | |
Sbjct 7795 TACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA-----TAGATCAGTTGG 7741
Query 25200 TATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTG-CAGGCGATTGATCAAAA 25258
| | |||| | | |||| |||| || || | | ||| | || ||| |||| |
Sbjct 7740 TGTT-TTATTCCACATATCATATTG-AAGTATACCTTGGCTAACTGGTGATCCATCATAT 7683
Query 25259 GTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGA---TTGC-TCTAACGCAGCATA 25314
||| |||| ||| | | ||| || | || | | || ||||| ||| ||||
Sbjct 7682 GTTTCATATGAACCATATA--ATT--CAGCTAATTCGCAACTAGCCTCTAATGCACCATA 7627
Query 25315 ATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAAT 25374
||| || ||||||| || || ||||| || |||| ||| | || | |
Sbjct 7626 ATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTA 7567
Query 25375 TTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTT 25434
|||||| || | ||| ||||| || || || || | |||| ||| |||||
Sbjct 7566 ACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACG 7507
Query 25435 ATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAG 25494
| ||| | | | | ||||| | ||||| |||| |||| || | |||| |
Sbjct 7506 AAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAA 7447
Query 25495 ATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATC 25554
||| || | ||| ||| |||| |||| | || | ||||| | |||
Sbjct 7446 ATTTCTTGTAACAA--TTTTTGTAACTTCT----TTAAGTTTTTTAAAATCA----TAT- 7398
Query 25555 GTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTG 25614
||| ||||| | | ||||| || |||||| ||||| ||||||||||||||||||
Sbjct 7397 -TTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339
Query 25615 TTCTTTCCCGT-CAGAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTC 25673
||| | | || | ||||||||| || || |||| | || ||| |||| || |
Sbjct 7338 TTCAT-CTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGC 7280
Query 25674 CATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTT 25732
|| || | ||||||| | | ||| ||| |||||||||| | |||||| ||
Sbjct 7279 CAATGTTTTGTTGATTACTTTTTCGATT-ACACGCATCTTTATATAACATATATGGAGTA 7221
Query 25733 CCTGTTTCAATTTGAGATACTAAAATTTTCTC---CCAAAGTTCTCTCGCTTTTACTTTC 25789
|| ||||||| ||||||| | |||| | | ||| | | | ||||| | | |
Sbjct 7220 CCAGTTTCAACTTGAGATTC---AATTATAGCAAACCATAATGAACGTGCTTTAATTGTT 7164
Query 25790 TT--TACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTA 25847
|| || | | ||| ||| || | | ||||||| | |||||| || |
Sbjct 7163 TTATTAGCACG--ACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCC 7106
Query 25848 TTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAAATGCC 25907
| | | | ||| ||| || | | ||| |||||| | ||| ||
Sbjct 7105 ATACATTAAATAAA------CCAG-------GACATT--TATGTGGACACATTAATGACC 7061
Query 25908 AATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATA 25967
||| | ||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 7060 AATTATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATA 7001
Query 25968 AATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAA 26027
|||| || || | ||||||| |||| ||| ||||||| || ||| || |||||||
Sbjct 7000 AATCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAA 6941
Query 26028 TATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTT 26087
|||||| ||||||||||||||||| |||||||| |||| || ||| |||||||
Sbjct 6940 TATCTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTT 6881
Query 26088 GATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAA 26147
|||| || ||||| ||| | ||| || || |||||||| ||||| ||| |||| |
Sbjct 6880 GATCAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATA 6821
Query 26148 ATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGA 26207
|| ||||||| | ||| | ||| | || | || || ||| || || |
Sbjct 6820 TACCATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAA 6761
Query 26208 TTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTA 26267
| |||||||| |||||| || ||| || | | || || | || || |||| |
Sbjct 6760 TACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAA 6701
Query 26268 TGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTG 26327
| |||| | |||| |||||||||||| || |||||||| | | || |||| |||
Sbjct 6700 TTGAATCATCAACCATTGTTAATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTG 6641
Query 26328 AATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC-ACTCAAAGCTGTATAAGTT 26386
| ||||||||| |||| ||||||||| |||| | ||| | |||| | ||||||||
Sbjct 6640 CAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGAT-TATAAGTT 6582
Query 26387 TCAAGAACTTCATCGATATT------GTAATTACTAACTTCAATA-GCTGTTCTTAACCA 26439
|||| ||| |||| ||||| || ||| |||| ||| | || ||| |
Sbjct 6581 TCAATAACAGCATCAATATTATCACCGTGTATACCAACTGCAACACGC----ATTA---A 6529
Query 26440 CATATATTGAGGTCGTTCAATTACATTATTTTCC--GCATCTCTAATCAAATAAGATTTT 26497
||||| ||| |||| |||| || | ||| || || | ||| |||||| ||| ||
Sbjct 6528 CATATGTTGTGGTCTTTCA---GCAAT-TTTACCATTAATTTTTAA-CAAATATGATCTT 6474
Query 26498 TCTAAAGTTTTCAATCCAAAATAATCAT 26525
||||| ||||| || |||||||||| ||
Sbjct 6473 TCTAATGTTTTAAAACCAAAATAATTAT 6446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252628931301050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |