Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq69808 295 3e-75 >seq69808 Length=9325 Score = 295 bits (326), Expect = 3e-75 Identities = 1217/1888 (64%), Gaps = 90/1888 (5%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| |||| | | |||||||| |||| | |||||||||||||||||| || Sbjct 8270 GTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAA 8211 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784 |||||| || ||||||||||||||||||||| || |||| | ||| | Sbjct 8210 CCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACA 8151 Query 24785 AACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATG 24844 | || | |||||| || || || | ||||||||| | | || Sbjct 8150 TGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCATTTGCATT 8091 Query 24845 ATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATA 24904 ||||| | || || || || ||||||| ||| ||| ||| |||| ||| Sbjct 8090 TGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATTTTGGTATA 8031 Query 24905 CTTGCAATATTTTGAACTGATCCA---TTTTCTCTCAATAGATTCAATCTCATATTCGGT 24961 | |||| | ||| | || ||| ||| | | | | ||| | |||||| Sbjct 8030 TTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATT---TTTCATATCATCA 7974 Query 24962 GTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCT 25021 ||| | || || || | | |||| | | ||| | ||| | | || |||||| Sbjct 7973 TCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAACAAATTCA 7914 Query 25022 CCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTAT 25079 ||||| || || | | | || |||| ||||| || | || ||||| |||| |||| Sbjct 7913 CCAGATAATACACGACGATGATAGATA--TTTGATGTATAAGGCTCAAATGATTCGTTAT 7856 Query 25080 TTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCA 25139 | ||||| ||||| | || ||||||||||||||| ||| ||||| | ||||||| | Sbjct 7855 TACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGA 7796 Query 25140 AACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAACTCGA 25199 ||||| || ||| | || ||| | || || ||||| | || | | | | Sbjct 7795 TACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA-----TAGATCAGTTGG 7741 Query 25200 TATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTG-CAGGCGATTGATCAAAA 25258 | | |||| | | |||| |||| || || | | ||| | || ||| |||| | Sbjct 7740 TGTT-TTATTCCACATATCATATTG-AAGTATACCTTGGCTAACTGGTGATCCATCATAT 7683 Query 25259 GTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGA---TTGC-TCTAACGCAGCATA 25314 ||| |||| ||| | | ||| || | || | | || ||||| ||| |||| Sbjct 7682 GTTTCATATGAACCATATA--ATT--CAGCTAATTCGCAACTAGCCTCTAATGCACCATA 7627 Query 25315 ATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAAT 25374 ||| || ||||||| || || ||||| || |||| ||| | || | | Sbjct 7626 ATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTA 7567 Query 25375 TTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTT 25434 |||||| || | ||| ||||| || || || || | |||| ||| ||||| Sbjct 7566 ACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACG 7507 Query 25435 ATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAG 25494 | ||| | | | | ||||| | ||||| |||| |||| || | |||| | Sbjct 7506 AAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAA 7447 Query 25495 ATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATC 25554 ||| || | ||| ||| |||| |||| | || | ||||| | ||| Sbjct 7446 ATTTCTTGTAACAA--TTTTTGTAACTTCT----TTAAGTTTTTTAAAATCA----TAT- 7398 Query 25555 GTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTG 25614 ||| ||||| | | ||||| || |||||| ||||| |||||||||||||||||| Sbjct 7397 -TTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339 Query 25615 TTCTTTCCCGT-CAGAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTC 25673 ||| | | || | ||||||||| || || |||| | || ||| |||| || | Sbjct 7338 TTCAT-CTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGC 7280 Query 25674 CATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTT 25732 || || | ||||||| | | ||| ||| |||||||||| | |||||| || Sbjct 7279 CAATGTTTTGTTGATTACTTTTTCGATT-ACACGCATCTTTATATAACATATATGGAGTA 7221 Query 25733 CCTGTTTCAATTTGAGATACTAAAATTTTCTC---CCAAAGTTCTCTCGCTTTTACTTTC 25789 || ||||||| ||||||| | |||| | | ||| | | | ||||| | | | Sbjct 7220 CCAGTTTCAACTTGAGATTC---AATTATAGCAAACCATAATGAACGTGCTTTAATTGTT 7164 Query 25790 TT--TACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTA 25847 || || | | ||| ||| || | | ||||||| | |||||| || | Sbjct 7163 TTATTAGCACG--ACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCC 7106 Query 25848 TTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAAATGCC 25907 | | | | ||| ||| || | | ||| |||||| | ||| || Sbjct 7105 ATACATTAAATAAA------CCAG-------GACATT--TATGTGGACACATTAATGACC 7061 Query 25908 AATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATA 25967 ||| | ||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 7060 AATTATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATA 7001 Query 25968 AATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAA 26027 |||| || || | ||||||| |||| ||| ||||||| || ||| || ||||||| Sbjct 7000 AATCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAA 6941 Query 26028 TATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTT 26087 |||||| ||||||||||||||||| |||||||| |||| || ||| ||||||| Sbjct 6940 TATCTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTT 6881 Query 26088 GATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAA 26147 |||| || ||||| ||| | ||| || || |||||||| ||||| ||| |||| | Sbjct 6880 GATCAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATA 6821 Query 26148 ATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGA 26207 || ||||||| | ||| | ||| | || | || || ||| || || | Sbjct 6820 TACCATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAA 6761 Query 26208 TTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTA 26267 | |||||||| |||||| || ||| || | | || || | || || |||| | Sbjct 6760 TACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAA 6701 Query 26268 TGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTG 26327 | |||| | |||| |||||||||||| || |||||||| | | || |||| ||| Sbjct 6700 TTGAATCATCAACCATTGTTAATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTG 6641 Query 26328 AATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC-ACTCAAAGCTGTATAAGTT 26386 | ||||||||| |||| ||||||||| |||| | ||| | |||| | |||||||| Sbjct 6640 CAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGAT-TATAAGTT 6582 Query 26387 TCAAGAACTTCATCGATATT------GTAATTACTAACTTCAATA-GCTGTTCTTAACCA 26439 |||| ||| |||| ||||| || ||| |||| ||| | || ||| | Sbjct 6581 TCAATAACAGCATCAATATTATCACCGTGTATACCAACTGCAACACGC----ATTA---A 6529 Query 26440 CATATATTGAGGTCGTTCAATTACATTATTTTCC--GCATCTCTAATCAAATAAGATTTT 26497 ||||| ||| |||| |||| || | ||| || || | ||| |||||| ||| || Sbjct 6528 CATATGTTGTGGTCTTTCA---GCAAT-TTTACCATTAATTTTTAA-CAAATATGATCTT 6474 Query 26498 TCTAAAGTTTTCAATCCAAAATAATCAT 26525 ||||| ||||| || |||||||||| || Sbjct 6473 TCTAATGTTTTAAAACCAAAATAATTAT 6446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252628931301050