Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq19915 129 7e-25 >seq19915 Length=15128 Score = 129 bits (142), Expect = 7e-25 Identities = 378/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 ||||||| | ||||||||| || || | || ||||||||||| ||||| |||||||| Sbjct 7601 AGATGTTCTTTTACACCAATTGGTCCCATTCCGGGACCTCCACCACCATGAGGAATACAA 7660 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA 138290 ||||| |||||||| || | ||| |||| || |||||||||| || || | Sbjct 7661 AATGTTTTATGTAAGTTCAAATGGGATACGTCACTTCCATAGTCACCAGGACGACATAAA 7720 Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC- 138349 || || |||||||| | ||| || ||||| | || || || ||||||| | ||||| Sbjct 7721 CCGACTTGTGCATTCATATTCGCTCCATCTAAGTAAACTTGCCCACCATGTTTGTGAACC 7780 Query 138350 -GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 ||| | ||||| | | | | || |||||| || || ||| || || ||||| | Sbjct 7781 AAATCGCAAATATCCGAC--ACGGTTTCTTCAAACACTCCCATAGTTGAAGGGTATGTTA 7838 Query 138409 TCATAATACATGAGA------GTTCAAATGTATTCATGATTGCTT-TCTTCTCTAGATCT 138461 |||||| || || | ||||| ||||| || |||| ||| | |||| Sbjct 7839 TCATAAGGCAAGATAAATCCTTTTCAA----ATTCA-GAAAGCTTGTCT--TTAAGATGG 7891 Query 138462 TTGATGTCTATGTTGCCATCATCATCACACT-TGACACCTACAACTTTCATTCCTGCCAT 138520 || ||||| || |||| ||| | || | | | | | | ||||||||||| ||||| Sbjct 7892 TTCATGTCAATACTGCCGTCAGTA-CAAATTCTAATCGGTTCTACTTTCATTCCAGCCAT 7950 Query 138521 GACTGCACTAGCAGGATTAGTTCCATGTGCTGACT--CTGGTATCAGACATACATTTCTT 138578 || ||| |||||||||||||| || ||| ||| || ||||| | ||| | Sbjct 7951 TTGAGCGGAAGCTGGATTAGTTCCATGGGC--ACTTATTGGAATTAGACAGATATTACGG 8008 Query 138579 TTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCC 138638 || | || | || ||||||| | || ||| ||||| ||||| || || Sbjct 8009 TTTCCTTCATTTTTAAATTCATGATATCGGCGAATGGCTCTAAGTCCGGCATATTCTCCT 8068 Query 138639 TGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCAT 138698 |||| ||| || ||||| || || || || | ||||| || ||||| || | Sbjct 8069 TGTGCTCCACTATTTGGTTGAAAAGAAATCTTGTCGTAGCCTGTTATTTCACACAAATCT 8128 Query 138699 TTCTGTAAGTCATCTATTATCTTTTGATAACC 138730 || | ||| || | | || || ||||| || Sbjct 8129 TTTTCTAATTCTTTAAACATTTTATGATATCC 8160 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || |||| |||||||||| ||||| | | |||||||| || || || ||||| || Sbjct 8720 CCTTCTGGACCATGATATATGGCATACATAGCTGACATATTAGCAAGAAGGGCTTGAGCA 8779 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 ||||| ||||| || |||||||| |||| | |||||| || ||||||||||||| |||| Sbjct 8780 GTGCAAATGTTGCTAGTTGCTTTATCTCGACGAATATGTTGTTCTCTAGTTTGTAATGCT 8839 Query 139383 AATCTGTATGCA 139394 | | |||||| Sbjct 8840 AGACGATATGCA 8851 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| ||||| ||||| ||| |||||||||||| ||| || || || || ||| || Sbjct 9433 CATTGCTTCTGCCGCTGCTGTTCCTTCATCTAATAAAGAAGCATTAGCCATATCTAACCC 9492 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | ||| | | || ||||||||||| || |||| ||| || | ||| || | || Sbjct 9493 AGTCATTTCAGATACCAGAGTTTGGTAATTCAACAAAGATTCTAAACGTCCTTGTGCAAT 9552 Query 139979 CTCAGCTTGATAGGGAGTGTA 139999 ||| ||||| || |||||||| Sbjct 9553 CTCTGCTTGGTATGGAGTGTA 9573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578033687340880