Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq19915 129 7e-25
>seq19915
Length=15128
Score = 129 bits (142), Expect = 7e-25
Identities = 378/572 (66%), Gaps = 24/572 (4%)
Strand=Plus/Plus
Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230
||||||| | ||||||||| || || | || ||||||||||| ||||| ||||||||
Sbjct 7601 AGATGTTCTTTTACACCAATTGGTCCCATTCCGGGACCTCCACCACCATGAGGAATACAA 7660
Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA 138290
||||| |||||||| || | ||| |||| || |||||||||| || || |
Sbjct 7661 AATGTTTTATGTAAGTTCAAATGGGATACGTCACTTCCATAGTCACCAGGACGACATAAA 7720
Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC- 138349
|| || |||||||| | ||| || ||||| | || || || ||||||| | |||||
Sbjct 7721 CCGACTTGTGCATTCATATTCGCTCCATCTAAGTAAACTTGCCCACCATGTTTGTGAACC 7780
Query 138350 -GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408
||| | ||||| | | | | || |||||| || || ||| || || ||||| |
Sbjct 7781 AAATCGCAAATATCCGAC--ACGGTTTCTTCAAACACTCCCATAGTTGAAGGGTATGTTA 7838
Query 138409 TCATAATACATGAGA------GTTCAAATGTATTCATGATTGCTT-TCTTCTCTAGATCT 138461
|||||| || || | ||||| ||||| || |||| ||| | ||||
Sbjct 7839 TCATAAGGCAAGATAAATCCTTTTCAA----ATTCA-GAAAGCTTGTCT--TTAAGATGG 7891
Query 138462 TTGATGTCTATGTTGCCATCATCATCACACT-TGACACCTACAACTTTCATTCCTGCCAT 138520
|| ||||| || |||| ||| | || | | | | | | ||||||||||| |||||
Sbjct 7892 TTCATGTCAATACTGCCGTCAGTA-CAAATTCTAATCGGTTCTACTTTCATTCCAGCCAT 7950
Query 138521 GACTGCACTAGCAGGATTAGTTCCATGTGCTGACT--CTGGTATCAGACATACATTTCTT 138578
|| ||| |||||||||||||| || ||| ||| || ||||| | ||| |
Sbjct 7951 TTGAGCGGAAGCTGGATTAGTTCCATGGGC--ACTTATTGGAATTAGACAGATATTACGG 8008
Query 138579 TTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCC 138638
|| | || | || ||||||| | || ||| ||||| ||||| || ||
Sbjct 8009 TTTCCTTCATTTTTAAATTCATGATATCGGCGAATGGCTCTAAGTCCGGCATATTCTCCT 8068
Query 138639 TGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCAT 138698
|||| ||| || ||||| || || || || | ||||| || ||||| || |
Sbjct 8069 TGTGCTCCACTATTTGGTTGAAAAGAAATCTTGTCGTAGCCTGTTATTTCACACAAATCT 8128
Query 138699 TTCTGTAAGTCATCTATTATCTTTTGATAACC 138730
|| | ||| || | | || || ||||| ||
Sbjct 8129 TTTTCTAATTCTTTAAACATTTTATGATATCC 8160
Score = 104 bits (114), Expect = 3e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322
|| |||| |||||||||| ||||| | | |||||||| || || || ||||| ||
Sbjct 8720 CCTTCTGGACCATGATATATGGCATACATAGCTGACATATTAGCAAGAAGGGCTTGAGCA 8779
Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382
||||| ||||| || |||||||| |||| | |||||| || ||||||||||||| ||||
Sbjct 8780 GTGCAAATGTTGCTAGTTGCTTTATCTCGACGAATATGTTGTTCTCTAGTTTGTAATGCT 8839
Query 139383 AATCTGTATGCA 139394
| | ||||||
Sbjct 8840 AGACGATATGCA 8851
Score = 96.9 bits (106), Expect = 4e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
|||||| ||||| ||||| ||| |||||||||||| ||| || || || || ||| ||
Sbjct 9433 CATTGCTTCTGCCGCTGCTGTTCCTTCATCTAATAAAGAAGCATTAGCCATATCTAACCC 9492
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| | ||| | | || ||||||||||| || |||| ||| || | ||| || | ||
Sbjct 9493 AGTCATTTCAGATACCAGAGTTTGGTAATTCAACAAAGATTCTAAACGTCCTTGTGCAAT 9552
Query 139979 CTCAGCTTGATAGGGAGTGTA 139999
||| ||||| || ||||||||
Sbjct 9553 CTCTGCTTGGTATGGAGTGTA 9573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578033687340880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |