Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq131567 129 8e-25 seq105702 120 4e-22 >seq131567 Length=1176 Score = 129 bits (142), Expect = 8e-25 Identities = 204/290 (70%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||| || || |||||| |||| | || | ||||||||||| | ||||||||| || Sbjct 292 TCCAGTTGCGATAACATAATCTTGTGGACGATTCTGTTGAAGCATCATCCACATAGCTTC 351 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 || || |||| |||||| ||||| || || || || | |||||||| | ||| Sbjct 352 CACGTAGTCTCGGGCATGGCCCCAATCTCGTTTTGAGTCTAAATTTCCTAACTCAAAAAC 411 Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAA 47962 ||| | | || ||| | |||| | | | || || || || || |||| Sbjct 412 TTCTAATTGA--TTTAGAAAAA--TTTTGGCAACCGAACGAGTTATTTTTCGGGTAACAA 467 Query 47963 AAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022 || |||||||||| | |||||||||||||||||||||||| ||| |||||||| |||| Sbjct 468 AATTTTCACCACGCCGTGGAGATTCATGATTAAAAAGAATTCCATTACAGGCAAACATAT 527 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 ||| | ||| | ||| || ||||||||| || ||||| | ||| ||| Sbjct 528 TGTAAGCTTCTCTATAATTAACTACTATCCAATATCCATACATTTTAGCA 577 >seq105702 Length=1509 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 48295 TTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTT 48354 |||||||||||||||||||| | | | | | | | ||| || | || || ||| Sbjct 813 TTATAAATCTCATCTGGTTGGATTTCTTTTACTAAACGGATTAAGTTCGAAGTATCAGTT 754 Query 48355 AAGTCTCCATAATGCAATTTTAATTGATC------ATAAATGTGA---TCAATTCTATGT 48405 || || |||||||||||||| | || ||| || || | | |||||||| | | Sbjct 753 AAATCACCATAATGCAATTTAATTTTATCACTGTTATTAACGACAGCGTCAATTCTTTCT 694 Query 48406 GTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGA 48465 ||||||| |||| |||| ||| | | ||| ||||| ||||| || ||||| | |||| Sbjct 693 GTATTAAAAGAAGAGGCCCTACGAATTAAACCGTGAACTTCATAGCCTTTTTCGATAAGA 634 Query 48466 AGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAG 48514 | || |||||||| |||||||||| ||||| || || || ||||||| Sbjct 633 AACTCAGCTAAGTAAGAACCATCTTAGCCTGTTATGCCTGTAATTAAAG 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664385569868080