Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq131567 129 8e-25
seq105702 120 4e-22
>seq131567
Length=1176
Score = 129 bits (142), Expect = 8e-25
Identities = 204/290 (70%), Gaps = 8/290 (3%)
Strand=Plus/Plus
Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846
||| || || |||||| |||| | || | ||||||||||| | ||||||||| ||
Sbjct 292 TCCAGTTGCGATAACATAATCTTGTGGACGATTCTGTTGAAGCATCATCCACATAGCTTC 351
Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906
|| || |||| |||||| ||||| || || || || | |||||||| | |||
Sbjct 352 CACGTAGTCTCGGGCATGGCCCCAATCTCGTTTTGAGTCTAAATTTCCTAACTCAAAAAC 411
Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAA 47962
||| | | || ||| | |||| | | | || || || || || ||||
Sbjct 412 TTCTAATTGA--TTTAGAAAAA--TTTTGGCAACCGAACGAGTTATTTTTCGGGTAACAA 467
Query 47963 AAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022
|| |||||||||| | |||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 468 AATTTTCACCACGCCGTGGAGATTCATGATTAAAAAGAATTCCATTACAGGCAAACATAT 527
Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072
||| | ||| | ||| || ||||||||| || ||||| | ||| |||
Sbjct 528 TGTAAGCTTCTCTATAATTAACTACTATCCAATATCCATACATTTTAGCA 577
>seq105702
Length=1509
Score = 120 bits (132), Expect = 4e-22
Identities = 164/229 (72%), Gaps = 9/229 (4%)
Strand=Plus/Minus
Query 48295 TTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTT 48354
|||||||||||||||||||| | | | | | | | ||| || | || || |||
Sbjct 813 TTATAAATCTCATCTGGTTGGATTTCTTTTACTAAACGGATTAAGTTCGAAGTATCAGTT 754
Query 48355 AAGTCTCCATAATGCAATTTTAATTGATC------ATAAATGTGA---TCAATTCTATGT 48405
|| || |||||||||||||| | || ||| || || | | |||||||| | |
Sbjct 753 AAATCACCATAATGCAATTTAATTTTATCACTGTTATTAACGACAGCGTCAATTCTTTCT 694
Query 48406 GTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGA 48465
||||||| |||| |||| ||| | | ||| ||||| ||||| || ||||| | ||||
Sbjct 693 GTATTAAAAGAAGAGGCCCTACGAATTAAACCGTGAACTTCATAGCCTTTTTCGATAAGA 634
Query 48466 AGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAG 48514
| || |||||||| |||||||||| ||||| || || || |||||||
Sbjct 633 AACTCAGCTAAGTAAGAACCATCTTAGCCTGTTATGCCTGTAATTAAAG 585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 664385569868080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |