Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 208 9e-49
>seq69808
Length=9325
Score = 208 bits (230), Expect = 9e-49
Identities = 462/686 (67%), Gaps = 9/686 (1%)
Strand=Plus/Plus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||| || ||||||||| | || || ||||| ||||| || ||||| ||| |
Sbjct 7213 GAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAATCGAAAAAGTAATCAACAA 7272
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
|| | || || || || | ||||| || || |||||| | || || |||
Sbjct 7273 AACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAATTGTTGAATATTCAGCACCA 7332
Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084
||||| | |||||||| ||||| || ||||| || | | || ||| | | |||
Sbjct 7333 GATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTTAAATATGTTTGTTACAGCAGAT 7392
Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144
| | | ||||| | |||||||| | ||| | ||||| |||||||| | |||| |
Sbjct 7393 AAA---AAATATGATTTTAAAAAACTTAAAGAAGTTACAAAAATTGTTACAAGAAATTTG 7449
Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCG 76203
|| | | ||||| | |||| |||||| | ||| || ||| || ||| | ||
Sbjct 7450 AATAAAATTATTGATATTAATTATTATCCTTTACCAGAA-GCAAAAAAATCAAATTTTCG 7508
Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263
|| |||| |||||| | || || ||||| | || |||| ||||||||| || ||
Sbjct 7509 TCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGATGCATTTATTTTAATGCGTTA 7568
Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323
| ||| ||| || ||||| || | | ||| | || |||||||| || ||| |
Sbjct 7569 CCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACAAATATTTGAAACAATTTATTA 7628
Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
| | | ||||| ||||| ||||| |||||| | ||||| ||||| |||| |||
Sbjct 7629 TGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATATGGTTCATATGAAACATATGA 7688
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443
|| || || | |||||| | ||||| | |||||||||| || | ||||| ||
Sbjct 7689 TGGATCACCAGTTAGCCAAGGTATACTTCAATATGATATGTGG-AATAAAACACCAA-CT 7746
Query 76444 CAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
| ||| | | ||| ||| || || ||| || || | | ||| | || || |
Sbjct 7747 GATCTATGGAATTGGAATGAACTTAAAGAAAAAATTAAACAACATGGTATCCGAAATTCT 7806
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
| || || ||||||||||||||||| || || |||||||| || |||||||| ||||
Sbjct 7807 TTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAAATTTTAGGTAATAACGAATCA 7866
Query 76562 TTTGAACCATACACAACAAACATCTA 76587
||||| || || ||| |||| |||||
Sbjct 7867 TTTGAGCCTTATACATCAAATATCTA 7892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595575610646720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |