Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq69808 208 9e-49 >seq69808 Length=9325 Score = 208 bits (230), Expect = 9e-49 Identities = 462/686 (67%), Gaps = 9/686 (1%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| || ||||||||| | || || ||||| ||||| || ||||| ||| | Sbjct 7213 GAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAATCGAAAAAGTAATCAACAA 7272 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | || || || || | ||||| || || |||||| | || || ||| Sbjct 7273 AACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAATTGTTGAATATTCAGCACCA 7332 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| | |||||||| ||||| || ||||| || | | || ||| | | ||| Sbjct 7333 GATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTTAAATATGTTTGTTACAGCAGAT 7392 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | | | ||||| | |||||||| | ||| | ||||| |||||||| | |||| | Sbjct 7393 AAA---AAATATGATTTTAAAAAACTTAAAGAAGTTACAAAAATTGTTACAAGAAATTTG 7449 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCG 76203 || | | ||||| | |||| |||||| | ||| || ||| || ||| | || Sbjct 7450 AATAAAATTATTGATATTAATTATTATCCTTTACCAGAA-GCAAAAAAATCAAATTTTCG 7508 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 || |||| |||||| | || || ||||| | || |||| ||||||||| || || Sbjct 7509 TCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGATGCATTTATTTTAATGCGTTA 7568 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | ||| ||| || ||||| || | | ||| | || |||||||| || ||| | Sbjct 7569 CCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACAAATATTTGAAACAATTTATTA 7628 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | | | ||||| ||||| ||||| |||||| | ||||| ||||| |||| ||| Sbjct 7629 TGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATATGGTTCATATGAAACATATGA 7688 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 || || || | |||||| | ||||| | |||||||||| || | ||||| || Sbjct 7689 TGGATCACCAGTTAGCCAAGGTATACTTCAATATGATATGTGG-AATAAAACACCAA-CT 7746 Query 76444 CAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | ||| | | ||| ||| || || ||| || || | | ||| | || || | Sbjct 7747 GATCTATGGAATTGGAATGAACTTAAAGAAAAAATTAAACAACATGGTATCCGAAATTCT 7806 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 | || || ||||||||||||||||| || || |||||||| || |||||||| |||| Sbjct 7807 TTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAAATTTTAGGTAATAACGAATCA 7866 Query 76562 TTTGAACCATACACAACAAACATCTA 76587 ||||| || || ||| |||| ||||| Sbjct 7867 TTTGAGCCTTATACATCAAATATCTA 7892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595575610646720