Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 143 4e-29
seq34035 131 2e-25
seq116239 120 4e-22
seq98857 87.8 3e-12
seq82763 87.8 3e-12
>seq50502
Length=11567
Score = 143 bits (158), Expect = 4e-29
Identities = 203/284 (71%), Gaps = 6/284 (2%)
Strand=Plus/Plus
Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472
||||| |||||||||||||| ||||| ||||| | |||||||| ||||| | ||
Sbjct 5104 TCTTTTGAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTT 5163
Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532
|| || || || ||||| | |||||| | | || || | | ||| | || | |
Sbjct 5164 TCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCA 5223
Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592
|||| ||| || | ||| ||||| || ||||| |||| | ||| |||||||| ||||||
Sbjct 5224 AATCGTTCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACA 5283
Query 18593 TATTTAATGAAAT---GTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTT 18649
| | ||| |||| ||| | || || | | || | ||| | | | |||||||||
Sbjct 5284 TGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTTTCCCAGTGAGCCATATCTTTT 5340
Query 18650 GATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693
|||| |||||||||||| ||||||||| |||| ||| |||||
Sbjct 5341 GATAAATCAACTTCTTCAACTGTCCAAAATGATGCTTCAGCCTG 5384
>seq34035
Length=19351
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| |||||| ||||||| | || || || || || ||| | || ||||||
Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||||| ||| ||| || ||| ||| || |||||||||||||| || ||||||||
Sbjct 10414 TCTGATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGAT 10473
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | || |||| || ||||| || || || ||| |||| ||||| ||||||
Sbjct 10474 CAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTAT 10533
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || |||||| | || | ||||||||
Sbjct 10534 AACATCCAAAAAGAGTCAACTTTGCATTTAGT 10565
>seq116239
Length=11340
Score = 120 bits (132), Expect = 4e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || ||| | ||||| || ||||||||||| |||||||| || || ||
Sbjct 4781 AAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCG 4722
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||| | ||| ||| || ||| || || ||||| || |||||||| || |||||
Sbjct 4721 TCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGAT 4662
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | ||||||| ||| || ||||| | || ||| || || || || |||||
Sbjct 4661 CAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTAC 4602
Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
|| || || ||| || | || |||||||| ||
Sbjct 4601 AACAT-TCAAAAGGAATCCACACTTCATTTGGT 4570
>seq98857
Length=3708
Score = 87.8 bits (96), Expect = 3e-12
Identities = 134/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| ||||| ||| ||||||| || || | |||| ||| ||
Sbjct 776 AATGCAAATCTTTGTTAAGACATTAACTAGAAAAACAATCACCCTCAAAGTTGAACCTTT 717
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| ||| ||| | || || || |||||||| || || || |||| ||| ||
Sbjct 716 CGATAGAATTGAAAATATTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCTAGATCA 657
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||||||| || | || || |||||| |||||| | || | ||| ||||| |
Sbjct 656 ACAAAGATTAATCGTCGAAGGAAAACAGCTCTAAGATAGTCGTACATGATCTGATTACA- 598
Query 156002 TATATCCAAA 156011
| |||||||
Sbjct 597 -ACATCCAAA 589
>seq82763
Length=7752
Score = 87.8 bits (96), Expect = 3e-12
Identities = 221/330 (67%), Gaps = 16/330 (5%)
Strand=Plus/Plus
Query 26019 GAATTAGCCGATAATTTTTGCTATTATAATAAAAATTATAA----ATCAATAGAATCTTG 26074
|||||| | ||||||||||| | || |||||||||||| | ||||| | | |||
Sbjct 4011 GAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATATCAAAGG--TGTTG 4068
Query 26075 TCCTAATTGGGCAATTACTACTTTAGATTTACataaaaatgatgaaagaaataaattttt 26134
| | |||||| | | ||| | || |||| ||| ||| || ||| | | |||
Sbjct 4069 --CAAGTTGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGAAGTTATATTT- 4125
Query 26135 taatataaaagat---ttagaatatggaaaaacagataataAATTATGGAATTATTGTCA 26191
| | ||||||| ||||||| |||||| || || | | ||||||| |||
Sbjct 4126 --ACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAATTCAGCTCA 4183
Query 26192 ATATTATTTATTGAAATTTGGATATTTAAACGGTTATTTGAGAATGTTCTGGGCTAAAAA 26251
| | | || | || ||| | | | |||| ||| ||||||| |||||||| ||
Sbjct 4184 AATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGGCTAAGAA 4243
Query 26252 ATTATTAGAATGGACAAAAGATCCACAAGACGCTATAGATAAATGC-ATATATTTGAATG 26310
| | ||||||||||| || || || | || |||| || ||| || ||||||||||
Sbjct 4244 AATTTTAGAATGGACTGAATCACCTGAAAAAGCATTAGA-AATTGCAATTTATTTGAATG 4302
Query 26311 ACAAATATTTTTTCGATGGCTGCGATCCAA 26340
| |||||| | | ||||| | |||||||
Sbjct 4303 ATAAATATAGTCTTGATGGACGTGATCCAA 4332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 730652573170400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |