Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq50502 143 4e-29 seq34035 131 2e-25 seq116239 120 4e-22 seq98857 87.8 3e-12 seq82763 87.8 3e-12 >seq50502 Length=11567 Score = 143 bits (158), Expect = 4e-29 Identities = 203/284 (71%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 ||||| |||||||||||||| ||||| ||||| | |||||||| ||||| | || Sbjct 5104 TCTTTTGAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTT 5163 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 || || || || ||||| | |||||| | | || || | | ||| | || | | Sbjct 5164 TCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCA 5223 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 |||| ||| || | ||| ||||| || ||||| |||| | ||| |||||||| |||||| Sbjct 5224 AATCGTTCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACA 5283 Query 18593 TATTTAATGAAAT---GTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTT 18649 | | ||| |||| ||| | || || | | || | ||| | | | ||||||||| Sbjct 5284 TGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTTTCCCAGTGAGCCATATCTTTT 5340 Query 18650 GATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 |||| |||||||||||| ||||||||| |||| ||| ||||| Sbjct 5341 GATAAATCAACTTCTTCAACTGTCCAAAATGATGCTTCAGCCTG 5384 >seq34035 Length=19351 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| |||||| ||||||| | || || || || || ||| | || |||||| Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || ||| ||| || |||||||||||||| || |||||||| Sbjct 10414 TCTGATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGAT 10473 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || |||| || ||||| || || || ||| |||| ||||| |||||| Sbjct 10474 CAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTAT 10533 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || |||||| | || | |||||||| Sbjct 10534 AACATCCAAAAAGAGTCAACTTTGCATTTAGT 10565 >seq116239 Length=11340 Score = 120 bits (132), Expect = 4e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| || ||||||||||| |||||||| || || || Sbjct 4781 AAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCG 4722 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| ||| || ||| || || ||||| || |||||||| || ||||| Sbjct 4721 TCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGAT 4662 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| ||| || ||||| | || ||| || || || || ||||| Sbjct 4661 CAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTAC 4602 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || || ||| || | || |||||||| || Sbjct 4601 AACAT-TCAAAAGGAATCCACACTTCATTTGGT 4570 >seq98857 Length=3708 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| ||||| ||| ||||||| || || | |||| ||| || Sbjct 776 AATGCAAATCTTTGTTAAGACATTAACTAGAAAAACAATCACCCTCAAAGTTGAACCTTT 717 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| | || || || |||||||| || || || |||| ||| || Sbjct 716 CGATAGAATTGAAAATATTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCTAGATCA 657 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| || | || || |||||| |||||| | || | ||| ||||| | Sbjct 656 ACAAAGATTAATCGTCGAAGGAAAACAGCTCTAAGATAGTCGTACATGATCTGATTACA- 598 Query 156002 TATATCCAAA 156011 | ||||||| Sbjct 597 -ACATCCAAA 589 >seq82763 Length=7752 Score = 87.8 bits (96), Expect = 3e-12 Identities = 221/330 (67%), Gaps = 16/330 (5%) Strand=Plus/Plus Query 26019 GAATTAGCCGATAATTTTTGCTATTATAATAAAAATTATAA----ATCAATAGAATCTTG 26074 |||||| | ||||||||||| | || |||||||||||| | ||||| | | ||| Sbjct 4011 GAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATATCAAAGG--TGTTG 4068 Query 26075 TCCTAATTGGGCAATTACTACTTTAGATTTACataaaaatgatgaaagaaataaattttt 26134 | | |||||| | | ||| | || |||| ||| ||| || ||| | | ||| Sbjct 4069 --CAAGTTGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGAAGTTATATTT- 4125 Query 26135 taatataaaagat---ttagaatatggaaaaacagataataAATTATGGAATTATTGTCA 26191 | | ||||||| ||||||| |||||| || || | | ||||||| ||| Sbjct 4126 --ACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAATTCAGCTCA 4183 Query 26192 ATATTATTTATTGAAATTTGGATATTTAAACGGTTATTTGAGAATGTTCTGGGCTAAAAA 26251 | | | || | || ||| | | | |||| ||| ||||||| |||||||| || Sbjct 4184 AATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGGCTAAGAA 4243 Query 26252 ATTATTAGAATGGACAAAAGATCCACAAGACGCTATAGATAAATGC-ATATATTTGAATG 26310 | | ||||||||||| || || || | || |||| || ||| || |||||||||| Sbjct 4244 AATTTTAGAATGGACTGAATCACCTGAAAAAGCATTAGA-AATTGCAATTTATTTGAATG 4302 Query 26311 ACAAATATTTTTTCGATGGCTGCGATCCAA 26340 | |||||| | | ||||| | ||||||| Sbjct 4303 ATAAATATAGTCTTGATGGACGTGATCCAA 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730652573170400