Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq34035 181 2e-40 seq50502 149 1e-30 seq116239 129 1e-24 seq82763 93.3 8e-14 seq98857 91.5 3e-13 >seq34035 Length=19351 Score = 181 bits (200), Expect = 2e-40 Identities = 202/268 (75%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 192277 TAGATATAGAGTA----TACTTTTTA-GTTTAATAATACCACCTCTAAGACGTAATACTA 192331 ||| | ||||||| | ||| ||| |||| || ||| |||| ||| || | ||||| Sbjct 10621 TAGGTGTAGAGTAATTCTTCTTCTTACGTTTCTTAGCACCTCCTCGAAGGCGAAGTACTA 10562 Query 192332 AATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 |||| ||||| | |||||| ||| |||||||||||||| |||||| |||| || | || Sbjct 10561 AATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTT 10502 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 |||||||||| || ||||| | |||||||| || || || |||||||||||||| || | Sbjct 10501 GTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCT 10442 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 || ||| ||||| || | ||| || | ||| || || || || ||||| || || | Sbjct 10441 TAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTG 10382 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||||| |||||||||||| || Sbjct 10381 TAAGAGTTTTAACAAATATCTGCATATT 10354 >seq50502 Length=11567 Score = 149 bits (164), Expect = 1e-30 Identities = 176/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177 |||||||| ||||| ||| ||| || || |||||||| |||||| | |||||| Sbjct 5143 TACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCA 5202 Query 50178 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237 | | || ||||| | ||||||||||| | ||| ||| ||||||||||||||| Sbjct 5203 GTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAG 5262 Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAAT---GTTTTTCATTATCTTTTAAATTT 50294 ||||| || ||||||||||| | | |||||||| ||| | || || |||| ||| Sbjct 5263 GCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTT 5319 Query 50295 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 ||||| | | ||| ||||||||||| |||||||| | |||||||||||||||| Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAATGATGCT 5376 Score = 138 bits (152), Expect = 2e-27 Identities = 184/252 (73%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 |||||||||||||||||| ||| | || || || | || || |||||||| ||| Sbjct 4770 ATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAAT 4829 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 ||||| || ||||||| ||||| ||||| | ||||||||| | ||||||||| | | | Sbjct 4830 GTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTA 4889 Query 49938 AAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTT 49993 ||||| || || || ||| ||||| || || |||||| | || || |||| |||| Sbjct 4890 AAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA-ATTAGCAGATTT 4948 Query 49994 ATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053 | | | | ||||| || ||||||||| ||||||||||| | | | |||| |||| Sbjct 4949 A-CTTGCA--ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTC 5005 Query 50054 TATAGCTTTAAA 50065 ||||| || || Sbjct 5006 AATAGCATTGAA 5017 >seq116239 Length=11340 Score = 129 bits (142), Expect = 1e-24 Identities = 173/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTAT 192361 |||||| ||||| | ||||| | || ||||| | || | || ||| || || || | Sbjct 4545 AATAATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGA-ATGTTGT 4603 Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421 |||| || ||||| | |||| |||||||| || |||||||| || || | ||||||| Sbjct 4604 AATCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGAT 4663 Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481 | ||||| || ||||| || ||||| || || ||| ||||| || | || |||| Sbjct 4664 CTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACG 4723 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | ||||| ||||| |||||||| ||||| | ||| ||||||||||| Sbjct 4724 GCTCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq82763 Length=7752 Score = 93.3 bits (102), Expect = 8e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 43221 ACATAACCCATTGGATCACATCCGTCaaaaaaaTATTTATCATTGAGGTAAATAGCTTTA 43280 ||| |||| ||||||||| ||| |||| | |||||||||||| | ||||| || | Sbjct 4342 ACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCAATT 4283 Query 43281 TCGATTGCATCTTGTGGTGAAATCGTCCATTCTAATAATTTCTTAGCCCAAAACATTCTC 43340 || | ||| | || ||||| ||||||||||| | ||||||||||||| ||||||| Sbjct 4282 TCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATTCTT 4223 Query 43341 ATATATCCATTAAGATATCCAAATTTTAATAAATAATATTGACAATAATTCCATAATTTA 43400 | | | |||| | | ||| || || || | | |||| ||||||| | | | Sbjct 4222 AAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGATCA 4163 Query 43401 TTATCCGTTTTTCCATATTCTAAGTCACTTATACTGAATAAATTAGtttttttATCATTT 43460 | || |||||| ||||||| ||| | | || | | || | || |||||| ||| Sbjct 4162 TCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCTTTT 4103 Query 43461 TTATGCATATCTAAAGTAGTAATAGCCCAATTTG 43494 ||| || | ||| | | ||||||| ||| Sbjct 4102 CGATGTTCATTAAGAGTTTTTAAAGCCCAACTTG 4069 >seq98857 Length=3708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 ||||||||| |||| || ||| | | |||||| || | ||||||||||| |||||| Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || || || ||||| || || ||||| || || || ||||| || | ||| || Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 | ||| || || || || || ||||| ||||||||||| Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | ||| || | | ||||| ||| || |||| || |||| | Sbjct 774 ATTCCACCACGAAGGCGGAGTACCAAGTTAAGAGTAGACTCCTTTTAGATGTTGTAATTA 833 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| | ||| | ||| || ||| || | |||||||||||| |||||||| || Sbjct 834 GATAGAG------CATGA-CCAGTTATTTTCCTGGAAAGATTAATCTATGTTGATCTGGA 886 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTA-CATTAGTTATAGAATCTGACGATTC 192485 || ||| || |||||||| | | ||| |||| |||| || | || || | ||| Sbjct 887 GGAATTTGCTCCTTATCTTGGA-TCTATGCTTTACCATTTTCAATTGTATTGGAAGGTTC 945 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || | ||| | ||||||| |||||| ||| || ||||| Sbjct 946 AACCTTAAGGGTGATTGGTTTTCTAGTTAATATTTTAACAAAGATTCGCATT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982798676136900