Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 181 2e-40
seq50502 149 1e-30
seq116239 129 1e-24
seq82763 93.3 8e-14
seq98857 91.5 3e-13
>seq34035
Length=19351
Score = 181 bits (200), Expect = 2e-40
Identities = 202/268 (75%), Gaps = 5/268 (2%)
Strand=Plus/Minus
Query 192277 TAGATATAGAGTA----TACTTTTTA-GTTTAATAATACCACCTCTAAGACGTAATACTA 192331
||| | ||||||| | ||| ||| |||| || ||| |||| ||| || | |||||
Sbjct 10621 TAGGTGTAGAGTAATTCTTCTTCTTACGTTTCTTAGCACCTCCTCGAAGGCGAAGTACTA 10562
Query 192332 AATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391
|||| ||||| | |||||| ||| |||||||||||||| |||||| |||| || | ||
Sbjct 10561 AATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTT 10502
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
|||||||||| || ||||| | |||||||| || || || |||||||||||||| || |
Sbjct 10501 GTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCT 10442
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
|| ||| ||||| || | ||| || | ||| || || || || ||||| || || |
Sbjct 10441 TAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTG 10382
Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539
| | ||||||| |||||||||||| ||
Sbjct 10381 TAAGAGTTTTAACAAATATCTGCATATT 10354
>seq50502
Length=11567
Score = 149 bits (164), Expect = 1e-30
Identities = 176/237 (74%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177
|||||||| ||||| ||| ||| || || |||||||| |||||| | ||||||
Sbjct 5143 TACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCA 5202
Query 50178 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237
| | || ||||| | ||||||||||| | ||| ||| |||||||||||||||
Sbjct 5203 GTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAG 5262
Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAAT---GTTTTTCATTATCTTTTAAATTT 50294
||||| || ||||||||||| | | |||||||| ||| | || || |||| |||
Sbjct 5263 GCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTT 5319
Query 50295 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351
||||| | | ||| ||||||||||| |||||||| | ||||||||||||||||
Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAATGATGCT 5376
Score = 138 bits (152), Expect = 2e-27
Identities = 184/252 (73%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877
|||||||||||||||||| ||| | || || || | || || |||||||| |||
Sbjct 4770 ATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAAT 4829
Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937
||||| || ||||||| ||||| ||||| | ||||||||| | ||||||||| | | |
Sbjct 4830 GTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTA 4889
Query 49938 AAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTT 49993
||||| || || || ||| ||||| || || |||||| | || || |||| ||||
Sbjct 4890 AAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA-ATTAGCAGATTT 4948
Query 49994 ATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053
| | | | ||||| || ||||||||| ||||||||||| | | | |||| ||||
Sbjct 4949 A-CTTGCA--ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTC 5005
Query 50054 TATAGCTTTAAA 50065
||||| || ||
Sbjct 5006 AATAGCATTGAA 5017
>seq116239
Length=11340
Score = 129 bits (142), Expect = 1e-24
Identities = 173/238 (73%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTAT 192361
|||||| ||||| | ||||| | || ||||| | || | || ||| || || || |
Sbjct 4545 AATAATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGA-ATGTTGT 4603
Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421
|||| || ||||| | |||| |||||||| || |||||||| || || | |||||||
Sbjct 4604 AATCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGAT 4663
Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481
| ||||| || ||||| || ||||| || || ||| ||||| || | || ||||
Sbjct 4664 CTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACG 4723
Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || | ||||| ||||| |||||||| ||||| | ||| |||||||||||
Sbjct 4724 GCTCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq82763
Length=7752
Score = 93.3 bits (102), Expect = 8e-14
Identities = 185/274 (68%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 43221 ACATAACCCATTGGATCACATCCGTCaaaaaaaTATTTATCATTGAGGTAAATAGCTTTA 43280
||| |||| ||||||||| ||| |||| | |||||||||||| | ||||| || |
Sbjct 4342 ACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCAATT 4283
Query 43281 TCGATTGCATCTTGTGGTGAAATCGTCCATTCTAATAATTTCTTAGCCCAAAACATTCTC 43340
|| | ||| | || ||||| ||||||||||| | ||||||||||||| |||||||
Sbjct 4282 TCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATTCTT 4223
Query 43341 ATATATCCATTAAGATATCCAAATTTTAATAAATAATATTGACAATAATTCCATAATTTA 43400
| | | |||| | | ||| || || || | | |||| ||||||| | | |
Sbjct 4222 AAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGATCA 4163
Query 43401 TTATCCGTTTTTCCATATTCTAAGTCACTTATACTGAATAAATTAGtttttttATCATTT 43460
| || |||||| ||||||| ||| | | || | | || | || |||||| |||
Sbjct 4162 TCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCTTTT 4103
Query 43461 TTATGCATATCTAAAGTAGTAATAGCCCAATTTG 43494
||| || | ||| | | ||||||| |||
Sbjct 4102 CGATGTTCATTAAGAGTTTTTAAAGCCCAACTTG 4069
>seq98857
Length=3708
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420
||||||||| |||| || ||| | | |||||| || | ||||||||||| ||||||
Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62
Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480
|| || || ||||| || || ||||| || || || ||||| || | ||| ||
Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122
Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518
| ||| || || || || || ||||| |||||||||||
Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160
Score = 84.2 bits (92), Expect = 4e-11
Identities = 160/232 (69%), Gaps = 9/232 (4%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| || | ||| || | | ||||| ||| || |||| || |||| |
Sbjct 774 ATTCCACCACGAAGGCGGAGTACCAAGTTAAGAGTAGACTCCTTTTAGATGTTGTAATTA 833
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||| | ||| | ||| || ||| || | |||||||||||| |||||||| ||
Sbjct 834 GATAGAG------CATGA-CCAGTTATTTTCCTGGAAAGATTAATCTATGTTGATCTGGA 886
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTA-CATTAGTTATAGAATCTGACGATTC 192485
|| ||| || |||||||| | | ||| |||| |||| || | || || | |||
Sbjct 887 GGAATTTGCTCCTTATCTTGGA-TCTATGCTTTACCATTTTCAATTGTATTGGAAGGTTC 945
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| | || || || | ||| | ||||||| |||||| ||| || |||||
Sbjct 946 AACCTTAAGGGTGATTGGTTTTCTAGTTAATATTTTAACAAAGATTCGCATT 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982798676136900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |