Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq34035 168 1e-36 seq50502 149 1e-30 seq116239 111 3e-19 seq82763 89.7 9e-13 >seq34035 Length=19351 Score = 168 bits (186), Expect = 1e-36 Identities = 199/268 (74%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 171810 TAGATATAGAGTA----TACTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTA 171864 ||| | ||||||| | ||| ||| ||||| || ||| |||| ||| || | ||||| Sbjct 10621 TAGGTGTAGAGTAATTCTTCTTCTTACGTTTCTTAGCACCTCCTCGAAGGCGAAGTACTA 10562 Query 171865 AATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATT 171924 |||| ||||| | |||||| || |||||||| ||||| | |||| | || || | || Sbjct 10561 AATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTT 10502 Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 |||||||||| |||||||| | ||||| || || || || |||||||||||||| || | Sbjct 10501 GTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCT 10442 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 || ||| ||||| || ||||| || | ||| || || || || ||||| || || | Sbjct 10441 TAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTG 10382 Query 172045 TTAATGTTTTAATGAATATCTGCATTTT 172072 | | ||||||| ||||||||||| || Sbjct 10381 TAAGAGTTTTAACAAATATCTGCATATT 10354 >seq50502 Length=11567 Score = 149 bits (164), Expect = 1e-30 Identities = 176/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||| ||||| ||| ||| || || |||||||| |||||| | |||||| Sbjct 5143 TACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCA 5202 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | | || ||||| | ||||||||||| | ||| ||| ||||||||||||||| Sbjct 5203 GTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAG 5262 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAAT---GTTTTTCATTATCTTTTAAATTT 39596 ||||| || ||||||||||||| | |||||||| ||| | || || |||| ||| Sbjct 5263 GCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTT 5319 Query 39597 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 ||||| | | ||| ||||||||||| |||||||| | ||||||||| |||||| Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAATGATGCT 5376 Score = 129 bits (142), Expect = 1e-24 Identities = 180/250 (72%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 39122 TAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGT 39181 ||||||||||||||| ||| | ||||| || | || || |||||||| ||| || Sbjct 4772 TAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGT 4831 Query 39182 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 39241 ||| || ||||||| ||||| ||||| | ||||||||| | ||||||||| | | ||| Sbjct 4832 TAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAA 4891 Query 39242 GAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTTAT 39297 ||| || || || ||| ||||| || || |||||| | || || |||| |||| Sbjct 4892 GAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA-ATTAGCAGATTT-- 4948 Query 39298 CATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 | | |||||| || |||||||| ||||||||||| | | | |||| |||| | Sbjct 4949 -ACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAA 5007 Query 39358 TAGCTTTAAA 39367 |||| || || Sbjct 5008 TAGCATTGAA 5017 >seq116239 Length=11340 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| ||||| | || || | || ||||| | || | || || ||| || ||| Sbjct 4546 ATAATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAA 4605 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | | | || |||||||| || ||||||||||| || | ||||| || Sbjct 4606 TCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCT 4665 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || ||| ||||| || || || |||| Sbjct 4666 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGC 4725 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || | ||||| ||||| |||||||| ||||| | || ||||||||||| Sbjct 4726 TCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq82763 Length=7752 Score = 89.7 bits (98), Expect = 9e-13 Identities = 184/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 33042 ACATAACCCATCGGATCACATCCGTCaaaaaaaTATTTATCATTGAGATAAATAGCTTTA 33101 ||| |||| | ||||||| ||| |||| | |||||||||||| | |||||| || | Sbjct 4342 ACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCAATT 4283 Query 33102 TCAATAGCGTCTTGTGGCGAAATTGTCCATTCTAATAATTTCTTAGCCCAAAACATTCTC 33161 || | || | || || || ||||||||||| | ||||||||||||| ||||||| Sbjct 4282 TCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATTCTT 4223 Query 33162 ATATATCCATTAAGATATCCAAATTTTAATAAATAATATTGACAATAATTCCATAATTTA 33221 | | | |||| | | ||| || || || | | |||| ||||||| | | | Sbjct 4222 AAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGATCA 4163 Query 33222 TTATCTGTTTTTCCATATTCTAAGTCACGTATACTGAATAAATTAGtttttttATCATTT 33281 | || |||||| ||||||| ||| | | || | | || | || |||||| ||| Sbjct 4162 TCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCTTTT 4103 Query 33282 TTATGCATATCTAGAGTAGTAATAGCCCAATTTG 33315 ||| || ||||| | | ||||||| ||| Sbjct 4102 CGATGTTCATTAAGAGTTTTTAAAGCCCAACTTG 4069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903627885025200