Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 168 1e-36
seq50502 149 1e-30
seq116239 111 3e-19
seq82763 89.7 9e-13
>seq34035
Length=19351
Score = 168 bits (186), Expect = 1e-36
Identities = 199/268 (74%), Gaps = 5/268 (2%)
Strand=Plus/Minus
Query 171810 TAGATATAGAGTA----TACTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTA 171864
||| | ||||||| | ||| ||| ||||| || ||| |||| ||| || | |||||
Sbjct 10621 TAGGTGTAGAGTAATTCTTCTTCTTACGTTTCTTAGCACCTCCTCGAAGGCGAAGTACTA 10562
Query 171865 AATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATT 171924
|||| ||||| | |||||| || |||||||| ||||| | |||| | || || | ||
Sbjct 10561 AATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCAAGTT 10502
Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984
|||||||||| |||||||| | ||||| || || || || |||||||||||||| || |
Sbjct 10501 GTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCT 10442
Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044
|| ||| ||||| || ||||| || | ||| || || || || ||||| || || |
Sbjct 10441 TAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTCCCTG 10382
Query 172045 TTAATGTTTTAATGAATATCTGCATTTT 172072
| | ||||||| ||||||||||| ||
Sbjct 10381 TAAGAGTTTTAACAAATATCTGCATATT 10354
>seq50502
Length=11567
Score = 149 bits (164), Expect = 1e-30
Identities = 176/237 (74%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479
|||||||| ||||| ||| ||| || || |||||||| |||||| | ||||||
Sbjct 5143 TACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCA 5202
Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539
| | || ||||| | ||||||||||| | ||| ||| |||||||||||||||
Sbjct 5203 GTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCAGAG 5262
Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAAT---GTTTTTCATTATCTTTTAAATTT 39596
||||| || ||||||||||||| | |||||||| ||| | || || |||| |||
Sbjct 5263 GCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTA---GTTAATTTT 5319
Query 39597 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653
||||| | | ||| ||||||||||| |||||||| | ||||||||| ||||||
Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAATGATGCT 5376
Score = 129 bits (142), Expect = 1e-24
Identities = 180/250 (72%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 39122 TAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGT 39181
||||||||||||||| ||| | ||||| || | || || |||||||| ||| ||
Sbjct 4772 TAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGT 4831
Query 39182 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 39241
||| || ||||||| ||||| ||||| | ||||||||| | ||||||||| | | |||
Sbjct 4832 TAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAA 4891
Query 39242 GAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTTAT 39297
||| || || || ||| ||||| || || |||||| | || || |||| ||||
Sbjct 4892 GAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA-ATTAGCAGATTT-- 4948
Query 39298 CATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357
| | |||||| || |||||||| ||||||||||| | | | |||| |||| |
Sbjct 4949 -ACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAA 5007
Query 39358 TAGCTTTAAA 39367
|||| || ||
Sbjct 5008 TAGCATTGAA 5017
>seq116239
Length=11340
Score = 111 bits (122), Expect = 3e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
||||| ||||| | || || | || ||||| | || | || || ||| || |||
Sbjct 4546 ATAATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAA 4605
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || || | | | || |||||||| || ||||||||||| || | ||||| ||
Sbjct 4606 TCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCT 4665
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || ||||| || ||||| || || ||| ||||| || || || ||||
Sbjct 4666 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGC 4725
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || | ||||| ||||| |||||||| ||||| | || |||||||||||
Sbjct 4726 TCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq82763
Length=7752
Score = 89.7 bits (98), Expect = 9e-13
Identities = 184/274 (67%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 33042 ACATAACCCATCGGATCACATCCGTCaaaaaaaTATTTATCATTGAGATAAATAGCTTTA 33101
||| |||| | ||||||| ||| |||| | |||||||||||| | |||||| || |
Sbjct 4342 ACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCAATT 4283
Query 33102 TCAATAGCGTCTTGTGGCGAAATTGTCCATTCTAATAATTTCTTAGCCCAAAACATTCTC 33161
|| | || | || || || ||||||||||| | ||||||||||||| |||||||
Sbjct 4282 TCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATTCTT 4223
Query 33162 ATATATCCATTAAGATATCCAAATTTTAATAAATAATATTGACAATAATTCCATAATTTA 33221
| | | |||| | | ||| || || || | | |||| ||||||| | | |
Sbjct 4222 AAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGATCA 4163
Query 33222 TTATCTGTTTTTCCATATTCTAAGTCACGTATACTGAATAAATTAGtttttttATCATTT 33281
| || |||||| ||||||| ||| | | || | | || | || |||||| |||
Sbjct 4162 TCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCTTTT 4103
Query 33282 TTATGCATATCTAGAGTAGTAATAGCCCAATTTG 33315
||| || ||||| | | ||||||| |||
Sbjct 4102 CGATGTTCATTAAGAGTTTTTAAAGCCCAACTTG 4069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903627885025200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |