Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq69808 185 3e-41 seq46859 123 7e-23 seq122296 114 4e-20 seq50502 100 8e-16 seq981 93.3 1e-13 >seq69808 Length=9325 Score = 185 bits (204), Expect = 3e-41 Identities = 777/1208 (64%), Gaps = 23/1208 (2%) Strand=Plus/Minus Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382 || |||||||||| ||||| || | || ||| | | | | || || ||| | | ||| Sbjct 7630 CATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATG 7571 Query 155383 CGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGAT 155442 | | ||| | ||||| || ||||| || || || |||||||| | ||| |||| Sbjct 7570 GGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGAT 7511 Query 155443 GCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTA 155501 | | |||| | ||| ||||| || || ||| |||| | ||||||||| ||| Sbjct 7510 GACGAAAATTTGATTTTTTTG-CTTCTGGTAAAGGATAATAATTAATATCAATAATTTTA 7452 Query 155502 TTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTT 155558 || |||||| ||||| | | || || || ||| | ||| | | ||| || || Sbjct 7451 TTCAAATTTCTTGTAACAATT---TTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTT 7395 Query 155559 TTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCC 155618 ||||| | | ||||||||| | | |||| || || | |||||| || || | || Sbjct 7394 TTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCA 7335 Query 155619 TTGTCGTCGCTG--TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTA 155676 | | || |||| ||||| ||||| || ||||| ||| || || |||||||| | Sbjct 7334 TC-TGGT-GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAA 7277 Query 155677 AATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTG 155736 || | || ||| ||| | ||||| ||||| || |||| || ||||| || || | Sbjct 7276 TGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAG 7217 Query 155737 TCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGT 155796 | || | || | || | || | ||| | ||| || |||||| || || Sbjct 7216 TTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAG 7157 Query 155797 ATCTGCCTTCCGACTCATATTTCATATACAGC-GTTCGGTAATCCTCACCGTA-ACAATC 155854 | ||||| |||||||| ||||| || | || | | ||||| | ||| | Sbjct 7156 CACGACCTTCATTTTCATATTTAATATAAAGTTGATCAA-ATTTTTCACCCCATACATTA 7098 Query 155855 ACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACG 155914 | | | ||||| || |||| || || | | |||||| | | || | | ||||| Sbjct 7097 AATAAA-CCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACG 7039 Query 155915 CTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGA-CTCC 155972 | |||||||| ||| ||| || ||||| || | ||||| || | || || | Sbjct 7038 TTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTC 6979 Query 155973 TCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032 | || | || ||| || || | ||| ||||| |||||| | ||| ||| || Sbjct 6978 TGTTC-CAGT-ATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCT 6921 Query 156033 AGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTC 156089 | ||| |||||||| ||| | | || ||||| ||||| ||||| | |||| Sbjct 6920 AAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACA 6861 Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATA 156149 ||||| ||||||| || ||| || | | |||||| || | ||||| || || ||| Sbjct 6860 TTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATT 6801 Query 156150 TGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAA 156209 | ||| ||| || | ||| | || || |||||||||||| | ||| || Sbjct 6800 GATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGAT 6741 Query 156210 ATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGAT 156269 || ||||||| | | | || || ||||||||||| |||||||| |||||| | Sbjct 6740 ATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTT 6681 Query 156270 AGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTT 156329 | || | | || || ||||||||| || ||||| | || |||| ||| |||| | Sbjct 6680 AATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGAT 6621 Query 156330 GCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA 156389 |||||| ||||||| | || | | || || || || ||| |||| |||| Sbjct 6620 GCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTA 6561 Query 156390 GACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT 156449 ||||| |||| | | || | ||| ||||||| || || | || |||| Sbjct 6560 TCACCGTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTA 6501 Query 156450 CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGA 156509 |||| |||| | | |||| | ||| | |||||||| || ||||||| | || | Sbjct 6500 CCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCA 6441 Query 156510 AAATCACG 156517 |||||||| Sbjct 6440 AAATCACG 6433 >seq46859 Length=10281 Score = 123 bits (136), Expect = 7e-23 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||||| | ||| ||| ||||| ||||| || ||||||||| Sbjct 4168 CTATCAAATCGACCAGGTCTTAATAAAGCTTTATCTAAAATATCTATTCGGTTTGTTGCA 4227 Query 288910 GCCAATACAACAATAGATTCG--GTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 |||||||| || || ||| | ||| || ||||||||||| | || | |||| Sbjct 4228 GCCAATACTAC--TACATTTGTAGTTGTATTGAATCCATCCATTTCTACTAGTAACTGAT 4285 Query 288968 T--AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 | |||| ||| | || | | || | ||| ||| || | ||| | ||| Sbjct 4286 TTAAAGTATTTTCTTGCTCTGA--ATGTCCACC----GAA--ACTTTTACCGCCACGTTT 4337 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 || || ||||||||||| || || || | | |||||||| || || ||| || || Sbjct 4338 ACGTCCTACTGCATCAATTTCATCTATAAATAATATACACGGAGCATGTTTTCTAGCCAT 4397 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 || || | || | ||| | |||| |||| ||| ||| ||||||| | ||| || || Sbjct 4398 TGAGAACATATCACGTACTCTTGATGGACCAACACCTACAAACATTTCCAAAAACTCTGA 4457 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | || ||| | ||| | ||||||||||| || || || | || | | || Sbjct 4458 ACCAGACACTGTTAGGAAAGGAACATTTGCTTCTCCAGCAGTAGCTTTTGCTAATAAAGT 4517 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || ||||||||||| || || ||||| | |||||||||| |||||| || | Sbjct 4518 TTTTCCTGTTCCAGGCGGACCTGTTAATAATGCCCCCTTTGGTATTTTTGCACCTAAATC 4577 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 |||||| | ||| | ||||| || | |||| |||| || |||| ||| ||||| Sbjct 4578 AATATATTGTTGAGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCAATTTTAGCCTC 4637 Query 289326 ATCACATCC 289334 |||||||| Sbjct 4638 TTCACATCC 4646 >seq122296 Length=10093 Score = 114 bits (126), Expect = 4e-20 Identities = 216/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| | ||||||| ||| || |||||||| |||||||||||||| Sbjct 7118 ATCATAATTAACCATTACAGATTCCATAGCCTTTATCAAACGACGTTGAATATAACCAGT 7059 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || |||||||||||| |||||||| ||||| | ||||| |||||||| || || | Sbjct 7058 TTCAGCTGTTTTTACAGCAGTATCAATAAGACCCTCTCGACCTCCCATAGCGTGAAAATA 6999 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | || ||| | || | | | | ||| | || ||||| || | | || || Sbjct 6998 AAATTCAGATGGTGTCAAACCGGCTAAATATGAGTTTTCTACGAATCCCCTAGATTCCGG 6939 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATAC 302791 || || ||| |||| ||||| | || | ||| || | |||| ||||| || | Sbjct 6938 ACCATAATCATCTTTGATAAAATGTGGTAATGTTC-GTTTTCGAAAGCCATATGGTATTC 6880 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC 302851 | || || |||||||| ||||| |||| || | ||| | || || ||||| | || Sbjct 6879 GTTTACCTTCAACGTTTTGCTGACCCACACAAGCAATAACTTGTGATATATTAATATTGG 6820 Query 302852 TGCCCTTGGAGCCAG 302866 ||| || || |||| Sbjct 6819 AGCCTTTTGATCCAG 6805 >seq50502 Length=11567 Score = 100 bits (110), Expect = 8e-16 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 133138 ATTTTGGAC--TTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 ||||||||| || || ||||| |||||||| ||||| || ||||||||| | Sbjct 5370 ATTTTGGACAGTTGAA--GAAGTTGATTTATCAAAAGATATGGCTCACTGGGAAAAATTA 5313 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 ||| | | ||| ||||||||||| ||| ||||||| |||||||| || |||||| Sbjct 5312 ACTAGTGGAGAACGTCATTTTATTTCACATG-TTTTAGCATTTTTTGCAGCCTCTGATGG 5254 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 |||||| ||||||| | | ||| ||| |||||| ||| | | ||||| || Sbjct 5253 TATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTACAAATTACTGAAGCACG 5194 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTC 133356 | |||||||| | || ||||| || |||||| | ||||| Sbjct 5193 TTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTC 5152 >seq981 Length=15247 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 60134 GATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTT 60193 |||||| |||||||||||| | | |||| || || ||||| | | ||| || Sbjct 5716 GATAATGCTGTGAAAATATAACGTGCACTAGCTGAATCTTTTCCACCAAGCAAACGTGTA 5657 Query 60194 CCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCG 60253 ||||||||||| ||||| | || ||| || || || || || || |||||||| || Sbjct 5656 CCAAATTGTCCTCGTGGCTCCAGTAAATTTATATTATTTGAACCAACAAAATTTTGTGCT 5597 Query 60254 AGACCAACAATAGCACCAT--TTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTG 60311 | | ||||| | ||| |||| |||||||| ||||||||| |||| | ||| | Sbjct 5596 AAATTTACAATTG--TCATGCATAAAGATGCTTCACCATGATGATATGCAGACTTTTCAG 5539 Query 60312 AAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 ||| | ||| ||||| |||||||||| ||| Sbjct 5538 CAACTGAGCCAGCTAATTGAGCGACTTTAACTTC 5505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469303986668078