Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 185 3e-41
seq46859 123 7e-23
seq122296 114 4e-20
seq50502 100 8e-16
seq981 93.3 1e-13
>seq69808
Length=9325
Score = 185 bits (204), Expect = 3e-41
Identities = 777/1208 (64%), Gaps = 23/1208 (2%)
Strand=Plus/Minus
Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382
|| |||||||||| ||||| || | || ||| | | | | || || ||| | | |||
Sbjct 7630 CATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATG 7571
Query 155383 CGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGAT 155442
| | ||| | ||||| || ||||| || || || |||||||| | ||| ||||
Sbjct 7570 GGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGAT 7511
Query 155443 GCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTA 155501
| | |||| | ||| ||||| || || ||| |||| | ||||||||| |||
Sbjct 7510 GACGAAAATTTGATTTTTTTG-CTTCTGGTAAAGGATAATAATTAATATCAATAATTTTA 7452
Query 155502 TTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTT 155558
|| |||||| ||||| | | || || || ||| | ||| | | ||| || ||
Sbjct 7451 TTCAAATTTCTTGTAACAATT---TTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTT 7395
Query 155559 TTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCC 155618
||||| | | ||||||||| | | |||| || || | |||||| || || | ||
Sbjct 7394 TTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCA 7335
Query 155619 TTGTCGTCGCTG--TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTA 155676
| | || |||| ||||| ||||| || ||||| ||| || || |||||||| |
Sbjct 7334 TC-TGGT-GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAA 7277
Query 155677 AATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTG 155736
|| | || ||| ||| | ||||| ||||| || |||| || ||||| || || |
Sbjct 7276 TGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAG 7217
Query 155737 TCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGT 155796
| || | || | || | || | ||| | ||| || |||||| || ||
Sbjct 7216 TTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAG 7157
Query 155797 ATCTGCCTTCCGACTCATATTTCATATACAGC-GTTCGGTAATCCTCACCGTA-ACAATC 155854
| ||||| |||||||| ||||| || | || | | ||||| | ||| |
Sbjct 7156 CACGACCTTCATTTTCATATTTAATATAAAGTTGATCAA-ATTTTTCACCCCATACATTA 7098
Query 155855 ACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACG 155914
| | | ||||| || |||| || || | | |||||| | | || | | |||||
Sbjct 7097 AATAAA-CCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACG 7039
Query 155915 CTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGA-CTCC 155972
| |||||||| ||| ||| || ||||| || | ||||| || | || || |
Sbjct 7038 TTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTC 6979
Query 155973 TCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032
| || | || ||| || || | ||| ||||| |||||| | ||| ||| ||
Sbjct 6978 TGTTC-CAGT-ATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCT 6921
Query 156033 AGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTC 156089
| ||| |||||||| ||| | | || ||||| ||||| ||||| | ||||
Sbjct 6920 AAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACA 6861
Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATA 156149
||||| ||||||| || ||| || | | |||||| || | ||||| || || |||
Sbjct 6860 TTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATT 6801
Query 156150 TGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAA 156209
| ||| ||| || | ||| | || || |||||||||||| | ||| ||
Sbjct 6800 GATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGAT 6741
Query 156210 ATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGAT 156269
|| ||||||| | | | || || ||||||||||| |||||||| |||||| |
Sbjct 6740 ATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTT 6681
Query 156270 AGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTT 156329
| || | | || || ||||||||| || ||||| | || |||| ||| |||| |
Sbjct 6680 AATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGAT 6621
Query 156330 GCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA 156389
|||||| ||||||| | || | | || || || || ||| |||| ||||
Sbjct 6620 GCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTA 6561
Query 156390 GACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT 156449
||||| |||| | | || | ||| ||||||| || || | || ||||
Sbjct 6560 TCACCGTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTA 6501
Query 156450 CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGA 156509
|||| |||| | | |||| | ||| | |||||||| || ||||||| | || |
Sbjct 6500 CCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCA 6441
Query 156510 AAATCACG 156517
||||||||
Sbjct 6440 AAATCACG 6433
>seq46859
Length=10281
Score = 123 bits (136), Expect = 7e-23
Identities = 324/489 (66%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|||||||| | ||||| | ||| ||| ||||| ||||| || |||||||||
Sbjct 4168 CTATCAAATCGACCAGGTCTTAATAAAGCTTTATCTAAAATATCTATTCGGTTTGTTGCA 4227
Query 288910 GCCAATACAACAATAGATTCG--GTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967
|||||||| || || ||| | ||| || ||||||||||| | || | ||||
Sbjct 4228 GCCAATACTAC--TACATTTGTAGTTGTATTGAATCCATCCATTTCTACTAGTAACTGAT 4285
Query 288968 T--AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025
| |||| ||| | || | | || | ||| ||| || | ||| | |||
Sbjct 4286 TTAAAGTATTTTCTTGCTCTGA--ATGTCCACC----GAA--ACTTTTACCGCCACGTTT 4337
Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085
|| || ||||||||||| || || || | | |||||||| || || ||| || ||
Sbjct 4338 ACGTCCTACTGCATCAATTTCATCTATAAATAATATACACGGAGCATGTTTTCTAGCCAT 4397
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
|| || | || | ||| | |||| |||| ||| ||| ||||||| | ||| || ||
Sbjct 4398 TGAGAACATATCACGTACTCTTGATGGACCAACACCTACAAACATTTCCAAAAACTCTGA 4457
Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
| | || ||| | ||| | ||||||||||| || || || | || | | ||
Sbjct 4458 ACCAGACACTGTTAGGAAAGGAACATTTGCTTCTCCAGCAGTAGCTTTTGCTAATAAAGT 4517
Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265
|| ||||||||||| || || ||||| | |||||||||| |||||| || |
Sbjct 4518 TTTTCCTGTTCCAGGCGGACCTGTTAATAATGCCCCCTTTGGTATTTTTGCACCTAAATC 4577
Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
|||||| | ||| | ||||| || | |||| |||| || |||| ||| |||||
Sbjct 4578 AATATATTGTTGAGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCAATTTTAGCCTC 4637
Query 289326 ATCACATCC 289334
||||||||
Sbjct 4638 TTCACATCC 4646
>seq122296
Length=10093
Score = 114 bits (126), Expect = 4e-20
Identities = 216/315 (69%), Gaps = 2/315 (1%)
Strand=Plus/Minus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
||||||| || ||| | ||||||| ||| || |||||||| ||||||||||||||
Sbjct 7118 ATCATAATTAACCATTACAGATTCCATAGCCTTTATCAAACGACGTTGAATATAACCAGT 7059
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| || |||||||||||| |||||||| ||||| | ||||| |||||||| || || |
Sbjct 7058 TTCAGCTGTTTTTACAGCAGTATCAATAAGACCCTCTCGACCTCCCATAGCGTGAAAATA 6999
Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732
| || ||| | || | | | | ||| | || ||||| || | | || ||
Sbjct 6998 AAATTCAGATGGTGTCAAACCGGCTAAATATGAGTTTTCTACGAATCCCCTAGATTCCGG 6939
Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATAC 302791
|| || ||| |||| ||||| | || | ||| || | |||| ||||| || |
Sbjct 6938 ACCATAATCATCTTTGATAAAATGTGGTAATGTTC-GTTTTCGAAAGCCATATGGTATTC 6880
Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC 302851
| || || |||||||| ||||| |||| || | ||| | || || ||||| | ||
Sbjct 6879 GTTTACCTTCAACGTTTTGCTGACCCACACAAGCAATAACTTGTGATATATTAATATTGG 6820
Query 302852 TGCCCTTGGAGCCAG 302866
||| || || ||||
Sbjct 6819 AGCCTTTTGATCCAG 6805
>seq50502
Length=11567
Score = 100 bits (110), Expect = 8e-16
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 133138 ATTTTGGAC--TTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195
||||||||| || || ||||| |||||||| ||||| || ||||||||| |
Sbjct 5370 ATTTTGGACAGTTGAA--GAAGTTGATTTATCAAAAGATATGGCTCACTGGGAAAAATTA 5313
Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254
||| | | ||| ||||||||||| ||| ||||||| |||||||| || ||||||
Sbjct 5312 ACTAGTGGAGAACGTCATTTTATTTCACATG-TTTTAGCATTTTTTGCAGCCTCTGATGG 5254
Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314
|||||| ||||||| | | ||| ||| |||||| ||| | | ||||| ||
Sbjct 5253 TATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTACAAATTACTGAAGCACG 5194
Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTC 133356
| |||||||| | || ||||| || |||||| | |||||
Sbjct 5193 TTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTC 5152
>seq981
Length=15247
Score = 93.3 bits (102), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 60134 GATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTT 60193
|||||| |||||||||||| | | |||| || || ||||| | | ||| ||
Sbjct 5716 GATAATGCTGTGAAAATATAACGTGCACTAGCTGAATCTTTTCCACCAAGCAAACGTGTA 5657
Query 60194 CCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCG 60253
||||||||||| ||||| | || ||| || || || || || || |||||||| ||
Sbjct 5656 CCAAATTGTCCTCGTGGCTCCAGTAAATTTATATTATTTGAACCAACAAAATTTTGTGCT 5597
Query 60254 AGACCAACAATAGCACCAT--TTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTG 60311
| | ||||| | ||| |||| |||||||| ||||||||| |||| | ||| |
Sbjct 5596 AAATTTACAATTG--TCATGCATAAAGATGCTTCACCATGATGATATGCAGACTTTTCAG 5539
Query 60312 AAACATATCCACTGAATTGTGCGACTTTAATTTC 60345
||| | ||| ||||| |||||||||| |||
Sbjct 5538 CAACTGAGCCAGCTAATTGAGCGACTTTAACTTC 5505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1469303986668078
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