Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq130109 100 4e-16 seq981 86.0 8e-12 >seq130109 Length=4333 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 23090 GAAATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTT 23149 || |||| || |||||||| |||||||||| || |||||| | | |||||||| |||| Sbjct 2891 GACATCATGGTGATGGATACGATTTTGATGGCCCGGGTCAAGTGCTTGCTCATGCGTTTT 2950 Query 23150 TCCCTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 23202 |||||||| || | || || ||||| ||||||||| ||||||||||||| Sbjct 2951 ATCCTGGTACAGGGCGTGGTGGGGATGCGCATTTTGATGAAGAAGAAAATTGG 3003 >seq981 Length=15247 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAAC 166010 |||| || ||||||||| ||| | ||||| ||| | | | ||| | ||||||||| Sbjct 5509 TTAAAGTCGCTCAATTAGCTGGCTCAGTTGCTGAAAAGTCTGCATATCATCATGGTGAAG 5568 Query 166011 AAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAG 166070 | |||||| || || | || || || ||| ||||||||||| ||||||||||| Sbjct 5569 CATCTTTATGCATGACAATTGTAAATTTAGCACAAAATTTTGTTGGTTCAAATAATATAA 5628 Query 166071 CATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTG 166130 ||||| || || || ||||||||||| | || || || |||||||| ||| Sbjct 5629 ATTTACTGGAGCCACGAGGACAATTTGGTACACGTTTGCTTGGTGGAAAAGATTCAGCTA 5688 Query 166131 CATCAAGATATATTT 166145 || | ||||||| Sbjct 5689 GTGCACGTTATATTT 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631435761640720