Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq69808 232 6e-56 seq116239 158 1e-33 seq34035 140 3e-28 seq8255 91.5 1e-13 seq98857 89.7 5e-13 >seq69808 Length=9325 Score = 232 bits (256), Expect = 6e-56 Identities = 716/1093 (66%), Gaps = 26/1093 (2%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 |||||| |||||||| | ||| |||| || |||||||| |||| | |||||||||||| Sbjct 8280 TTTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCC 8221 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 |||||||| || | ||| | || | || || || || ||||| | ||| | || Sbjct 8220 AGTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGG 8161 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | | || ||||| |||||||||||||| ||||| || || ||||| || Sbjct 8160 TTCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGC 8101 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| | ||| ||||| | || ||||| || || || |||| ||| || || Sbjct 8100 CATTTGCATTTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGA 8041 Query 138393 TCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTCTC 138450 | ||||| | |||| | ||| || | || || | ||||| || |||| || Sbjct 8040 TTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTT--GCAATTATTGTATTTTTC 7983 Query 138451 ATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTA-TCAGATATCTGTTTATGA 138508 || ||||| | | | || ||| || | || || |||| | ||| || || | | Sbjct 7982 ATATCATCATCCCATAAAT-CAAGTTCTGTTAAATCTTTTAATAAGAAATGA-TTAACTA 7925 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 | ||||||||| | ||||| |||||| || || || || |||||||||| | Sbjct 7924 CAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATG 7865 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 ||||||| || || | ||| || || || | || || ||||| || | || | || Sbjct 7864 ATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAG 7805 Query 138629 AATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 |||| || | ||| || | || ||| ||| || || ||| | ||| | ||| Sbjct 7804 AATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAG 7745 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 | ||| |||| ||||||||||| || || | || || || | || || || | Sbjct 7744 TTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCAT 7685 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | | || ||| |||| | || || || ||| || ||||| | |||||||| | Sbjct 7684 ATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAAT 7625 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 |||| ||||| || || ||||| | | || || | || || || || | Sbjct 7624 AAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAAC 7565 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | | || || || || | ||||| ||||| | || | || ||||| || | Sbjct 7564 GCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGAA 7505 Query 138929 GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 |||||| |||||| || | ||||||||| || | ||| || ||||| || |||| Sbjct 7504 AATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAAT 7445 Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAA-TCGTTCAAAATCGTATGTGCCCCCGTTG 139047 ||| || | || || | |||||| | || |||||| ||| | || Sbjct 7444 TTCTTGTAACAATTTTTGTAACTT-CTTTAAGTTTTTTAAAATCATATTTT------TTA 7392 Query 139048 TCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACT 139107 || | || ||||| | || | | ||| || |||| || || || || | | Sbjct 7391 TCTGCT-----GTA-ACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATT 7338 Query 139108 TCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 || || || |||| ||||| |||||||| | ||||| ||||||||| || || || | Sbjct 7337 TCATCTGGT--GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGC 7280 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 | | ||||||||||| |||||||| ||||| |||||||| || | |||||| || || | Sbjct 7279 CAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTAC 7220 Query 139226 CAGTTTCCACTTG 139238 ||||||| ||||| Sbjct 7219 CAGTTTCAACTTG 7207 >seq116239 Length=11340 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| |||| || ||||| ||||| | || || || | | Sbjct 4778 ATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCGTCT 4719 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| |||||| |||||||| ||||| || || || |||||| Sbjct 4718 GACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAA 4659 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || || || |||||||| || | |||| ||||| ||| Sbjct 4658 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTACAAC 4599 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| || ||||| | || | ||||| || Sbjct 4598 ATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGG 4552 >seq34035 Length=19351 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || || || || || || ||| || | Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || || || || ||||| || |||||| ||| | | || ||||||||| Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536 Query 24884 ATTCAAAAGGAATCGAC 24900 || ||||| || || || Sbjct 10537 ATCCAAAAAGAGTCAAC 10553 >seq8255 Length=4873 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || | ||||| ||| | || ||||| | ||| | ||||| Sbjct 391 ACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAACCT 450 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || | |||||||||| || | || || || ||||| | ||| || || || || ||| Sbjct 451 AAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCAAA 510 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || | ||| | | | | | ||||| ||||||||||||||||| || || ||| Sbjct 511 CAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTCAC 570 Query 24908 TTGGT 24912 ||||| Sbjct 571 TTGGT 575 >seq98857 Length=3708 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24726 TAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAAC 24785 |||| || ||||| || || ||||| || ||| | |||| ||| | |||| || || Sbjct 156 TAACTGGAAAAACAATCACCCTCGAGGTTGAACCATCCGATACAATTGAAAATGTTAAGG 97 Query 24786 AAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGA 24845 ||||||||||||||| || ||||| ||||| ||||||||| | || ||||| | || | Sbjct 96 CAAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAACAAAGATTAATCTTCGAAGGAA 37 Query 24846 AACAGCT 24852 |||| || Sbjct 36 AACAACT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449147991866320