Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq100038 140 3e-28 seq116239 111 1e-19 >seq100038 Length=3326 Score = 140 bits (154), Expect = 3e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||||||| | || ||||| || |||| || || || || || ||||| || ||| | Sbjct 1636 TTGTAATCAAATTGAGTTTGAGCACCCAATTCACATCCAAAATATTTTGTTGGATAAGTT 1577 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || |||||||||| || || || | ||| | |||||| |||||||| || || || || Sbjct 1576 GCTGGACGTCCAATGGCTTTTGCAACTTCAGCCATGTTAACGATGACGGTTTTAATACCA 1517 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || || |||||||| |||||||| || || ||||||||||| || ||||| | || Sbjct 1516 TTTCCTTTTCCTTCAACCTTGGCATTAATACGTGGCATTTTGTAACGATAGAAAACATCG 1457 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 | ||||| || ||||| || ||||| |||| | |||||||| Sbjct 1456 GTTACATTTCGATTAACATTAACAGTAGCCATTTTTACTGGTGTT 1412 >seq116239 Length=11340 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 110256 TTTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 |||| | ||| | |||||||| || ||||| ||||||||||| || ||||| ||||| Sbjct 4795 TTTAGGAAAGACTCAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACAT 4736 Query 110316 TCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAG 110375 | || ||||| || || | | | || ||| |||||| ||||| |||| Sbjct 4735 TGGAGGTTGAGCCGTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAG 4676 Query 110376 GCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAA 110435 || | || ||||||||| | | |||| ||| || || || ||||||||| || | Sbjct 4675 GCATTCCACCAGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGA 4616 Query 110436 CAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 || || ||||||||||||||||||| ||||| || Sbjct 4615 CATTGTCGGATTACAACATTCAAAAGGAATCCAC 4582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412170930305942