Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq116239 168 5e-37 seq34035 141 7e-29 seq8255 82.4 6e-11 >seq116239 Length=11340 Score = 168 bits (186), Expect = 5e-37 Identities = 173/221 (78%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || ||||||||||| |||||||| ||||||||||| ||||||| |||| || | | Sbjct 4563 ACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAAT-GTCCTAC 4621 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||| || |||||| | ||||| | ||| ||||| || ||||| || || | Sbjct 4622 CATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCT 4681 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||| |||| ||| ||| |||| | |||||||| | || || || | || Sbjct 4682 TGTCTTG-AATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTA 4740 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| |||||||| ||||| ||||| ||||||||||| Sbjct 4741 ATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq34035 Length=19351 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || ||||| | || || |||||||| ||||||||||| | | ||| || | Sbjct 10571 CGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCA 10512 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| ||||| | || || | ||| ||||| || |||||||| ||||| Sbjct 10511 TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 10452 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||| ||| |||| | || ||||| |||| || ||||| ||||| Sbjct 10451 TCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATG 10392 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | |||||||||||||||||||| || Sbjct 10391 GTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq8255 Length=4873 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| ||| Sbjct 582 ACGAAGGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACC 523 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| | | |||||||||||| | || || || || || || || | | ||||| Sbjct 522 ATCTTTCAATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTT 463 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||| | | ||| |||| || ||| | ||||| | |||| ||||| | ||| || Sbjct 462 GTCTAGAATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGAT 403 Query 29751 AGTTTTGCCAGTTAA 29765 || || ||||| || Sbjct 402 GGTCTTACCAGTCAA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384593403464454