Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 168 5e-37
seq34035 141 7e-29
seq8255 82.4 6e-11
>seq116239
Length=11340
Score = 168 bits (186), Expect = 5e-37
Identities = 173/221 (78%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629
||| || ||||||||||| |||||||| ||||||||||| ||||||| |||| || | |
Sbjct 4563 ACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAAT-GTCCTAC 4621
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| || | ||| || |||||| | ||||| | ||| ||||| || ||||| || || |
Sbjct 4622 CATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCT 4681
Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
||||||| ||| |||| ||| ||| |||| | |||||||| | || || || | ||
Sbjct 4682 TGTCTTG-AATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTA 4740
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct 4741 ATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq34035
Length=19351
Score = 141 bits (156), Expect = 7e-29
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || ||||| | || || |||||||| ||||||||||| | | ||| || |
Sbjct 10571 CGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCA 10512
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || |||||||| ||||| | || || | ||| ||||| || |||||||| |||||
Sbjct 10511 TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 10452
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || ||| ||| |||| | || ||||| |||| || ||||| |||||
Sbjct 10451 TCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATG 10392
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || | |||||||||||||||||||| ||
Sbjct 10391 GTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354
>seq8255
Length=4873
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| |||
Sbjct 582 ACGAAGGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACC 523
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| | | |||||||||||| | || || || || || || || | | |||||
Sbjct 522 ATCTTTCAATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTT 463
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||| | | ||| |||| || ||| | ||||| | |||| ||||| | ||| ||
Sbjct 462 GTCTAGAATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGAT 403
Query 29751 AGTTTTGCCAGTTAA 29765
|| || ||||| ||
Sbjct 402 GGTCTTACCAGTCAA 388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384593403464454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |