Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq71358 125 1e-23 seq102974 122 2e-22 >seq71358 Length=2301 Score = 125 bits (138), Expect = 1e-23 Identities = 117/146 (80%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 44625 TCATCTTCAAACACCTAGCCGTGATGCCTGATGTACAC-TGGGGAATGGGCGCGACCATT 44683 |||| || |||||||| ||||||||||||||||| ||| ||||||| ||| |||| ||| Sbjct 1 TCATTTTTAAACACCTTGCCGTGATGCCTGATGTGCACGTGGGGAAAGGG-TCGACGATT 59 Query 44684 GGTTCGGTTATTGCGACTAAAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATTGGT 44743 || || || |||| || ||||| || |||||||| || || || || ||||||||| Sbjct 60 GGGAGCGTGATCCCGACCAAGGGTGCCATCATTCCTGCGGCGGTTGGCGTGGATATTGGT 119 Query 44744 TGTGGGATGATTGCCCAACAAACCTC 44769 ||||||||||||||| | |||| || Sbjct 120 TGTGGGATGATTGCCGTAAAAACGTC 145 >seq102974 Length=1575 Score = 122 bits (134), Expect = 2e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 72256 AACCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAG 72315 |||||||||||||||||||| | ||| |||| ||||| ||||| ||||| || ||||| Sbjct 1501 AACCCAATCCCATGGATCAATGCATGGCTGGTGTCTGATAACGTACAAGTTGCGCCACAA 1442 Query 72316 GAAGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTCGAAAGTGGACGCCAACGAT 72375 ||||| ||||| ||||||||||| || ||||| || ||||| |||| || || ||||| Sbjct 1441 GAAGTTGAAGTCAGTTCTTATCTTGTTGGTCAAATTGACTCTCAAGTCGATACCGACGAT 1382 Query 72376 TT 72377 || Sbjct 1381 TT 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 865895658442560