Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_023575.1
Length=45550
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 109 2e-19
>seq30817
Length=4284
Score = 109 bits (120), Expect = 2e-19
Identities = 202/294 (69%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 30098 TCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCC 30157
|||||||| ||||| || |||||| || ||||||| || || ||| | |||||
Sbjct 331 TCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCT 272
Query 30158 TCGACGTACAGTTGCTGACCCTTCTTT-ACGTGCTGCCCGACGATCTCCGCCAACTTCCC 30216
|||| || | ||| ||| |||| ||| | || | ||| | | || || || || ||
Sbjct 271 TCGATATAGACTTG-TGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCC 213
Query 30217 GAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTT 30276
||| | ||||| |||||||||||||| || | || ||||| ||||||||
Sbjct 212 GAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACG 153
Query 30277 CCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCG 30336
||| || || || || || || | ||| | |||||| |||||| |||||||| ||
Sbjct 152 CCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGGCATATAACG 93
Query 30337 AGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTCT 30390
|||| || || || | ||| || | ||||| ||||| || ||||||||
Sbjct 92 GATTTCAGGATCTTGCCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCT 39
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145407873891936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |