Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq30817 109 2e-19 >seq30817 Length=4284 Score = 109 bits (120), Expect = 2e-19 Identities = 202/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 30098 TCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCC 30157 |||||||| ||||| || |||||| || ||||||| || || ||| | ||||| Sbjct 331 TCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCT 272 Query 30158 TCGACGTACAGTTGCTGACCCTTCTTT-ACGTGCTGCCCGACGATCTCCGCCAACTTCCC 30216 |||| || | ||| ||| |||| ||| | || | ||| | | || || || || || Sbjct 271 TCGATATAGACTTG-TGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCC 213 Query 30217 GAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTT 30276 ||| | ||||| |||||||||||||| || | || ||||| |||||||| Sbjct 212 GAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACG 153 Query 30277 CCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCG 30336 ||| || || || || || || | ||| | |||||| |||||| |||||||| || Sbjct 152 CCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGGCATATAACG 93 Query 30337 AGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTCT 30390 |||| || || || | ||| || | ||||| ||||| || |||||||| Sbjct 92 GATTTCAGGATCTTGCCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145407873891936