Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq21713 82.4 2e-11 >seq21713 Length=22343 Score = 82.4 bits (90), Expect = 2e-11 Identities = 194/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 35680 TGAACGCTTGGAACACCGGAGAATTACATAAAATGGCGCTGCCGCCTTGTCATTTTGCCT 35739 ||| ||||||||| | || | | ||||||||| || || ||||| |||| | Sbjct 18515 TGACCGCTTGGAATCCAATCGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTA 18456 Query 35740 TTCAATTCAACGTCACCGATGGAAAATTAAATTGTATGGTTTACCAACG--CAGCGGAGA 35797 ||||||| |||| | ||||| ||||| ||| | | || ||| | |||| ||| Sbjct 18455 TTCAATTTTACGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGC--AGA 18398 Query 35798 TATGTTTTTAGGGGTACCGTTTAACATCGCCGGTTATGCAGCTATAACCATGATGATTGC 35857 |||| | | || || || ||||| || || ||||||| | || ||||| || Sbjct 18397 TATGGGTCTTGGAGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGC 18338 Query 35858 CCAATTAACCAATTTAGAGCCGGGCGAGCTTGTCCATGCTATCGCAGACGCGCACATTTA 35917 || | || |||||| |||| || || |||| || | | | || || || |||| Sbjct 18337 TCACATCACAAATTTAAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTA 18278 Query 35918 TTTAAATCACATCGAGCAAGTAAAGGAACAATTAAGCCGCGAGCCGCGACC 35968 ||||||||| || |||| |||| || ||||| | || | ||| ||||| Sbjct 18277 TTTAAATCATATTGAGCCGCTAAAAGAGCAATTGAATCGTGTGCCACGACC 18227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124730255685120