Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq130109 100 4e-16 seq981 87.8 2e-12 seq5662 84.2 3e-11 >seq130109 Length=4333 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22379 GAAATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTT 22438 || |||| || |||||||| |||||||||| || |||||| | | |||||||| |||| Sbjct 2891 GACATCATGGTGATGGATACGATTTTGATGGCCCGGGTCAAGTGCTTGCTCATGCGTTTT 2950 Query 22439 TCCCTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 22491 |||||||| || | || || ||||| ||||||||| ||||||||||||| Sbjct 2951 ATCCTGGTACAGGGCGTGGTGGGGATGCGCATTTTGATGAAGAAGAAAATTGG 3003 >seq981 Length=15247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 ||||||| ||||||||| ||| | ||||| ||| | | | ||| | ||||||||| Sbjct 5509 TTAAAGTCGCTCAATTAGCTGGCTCAGTTGCTGAAAAGTCTGCATATCATCATGGTGAAG 5568 Query 165221 AAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAG 165280 | |||||| || || | || || || ||| ||||||||||| ||||||||||| Sbjct 5569 CATCTTTATGCATGACAATTGTAAATTTAGCACAAAATTTTGTTGGTTCAAATAATATAA 5628 Query 165281 CATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||||| || || || ||||||||||| | || || || |||||||| || Sbjct 5629 ATTTACTGGAGCCACGAGGACAATTTGGTACACGTTTGCTTGGTGGAAAAGATTCAGC 5686 >seq5662 Length=5517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/194 (71%), Gaps = 14/194 (7%) Strand=Plus/Plus Query 50292 TGGAGACTTGGTTAAAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACC 50351 ||| || ||||| |||| || || ||||||||| ||| |||| ||| | ||||| Sbjct 3953 TGGTGATATGGTTGAAAGGCATATGTGTGATGGTGATATTGTTTTATTTAATCGTCAACC 4012 Query 50352 AACACTTCATAAAGCTTCTATGCAAAGTTTTA--AAGTTAAAATTCAACCAGTAAAAACA 50409 || | |||||| ||| || || | ||| |||||||||||| || |||| Sbjct 4013 AAGTTTACATAAAATGAGTAT--AATGTGCCATCAAGCAAAAATTCAACCACAAAGAACA 4070 Query 50410 TTTAA----AATGAATTTAGC-TATGACTAAAGCATATAATGCTGATTTTGATGGGGATG 50464 ||| ||||||| || | || || | |||||||||| ||||||||||| |||| Sbjct 4071 TTTCGTTTTAATGAAT---GCGTTTG--TACACCATATAATGCAGATTTTGATGGTGATG 4125 Query 50465 AAATGAATTTACAT 50478 |||||||||||||| Sbjct 4126 AAATGAATTTACAT 4139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627483957027840