Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq69808 132 5e-26 seq116239 116 4e-21 seq34035 100 3e-16 >seq69808 Length=9325 Score = 132 bits (146), Expect = 5e-26 Identities = 911/1445 (63%), Gaps = 36/1445 (2%) Strand=Plus/Minus Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 || |||||||| ||||| || | |||||||| || | || || ||||| || Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 | | ||| ||||| || | || | || || || ||| ||| | | ||| | | Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT-T 150957 |||| ||| ||| ||||||||| ||| ||||| | ||| |||| ||| || | Sbjct 7754 CATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695 Query 150958 GCTACCGGCAAACGTGCTATAAGGCTCAC-TAACAGATGCCAGTTCGTAACTGGCCTCGA 151016 | | || || | || ||| | || ||| | || | |||| |||| ||||| | Sbjct 7694 GAT-CCATCATATGTTTCATATGAACCATATAATTCA-GCTAATTCGCAACTAGCCTCTA 7637 Query 151017 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 151076 ||| ||| ||| | |||||| ||||||| ||| ||| || | || || Sbjct 7636 ATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTT 7577 Query 151077 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGG 151136 | || || |||| | || ||||||||| || || ||||| | ||| || || || | Sbjct 7576 CATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTG 7517 Query 151137 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAA 151196 | ||||| || | ||| ||||||||||| | | ||| || |||| |||||||| Sbjct 7516 GTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAA 7457 Query 151197 TTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG 151256 ||||||||||| | | ||| ||| || | | | || ||||||| | Sbjct 7456 TTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATT 7397 Query 151257 TATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTT 151313 | | || | || | | | |||| | ||||| || |||| |||||| || || ||| Sbjct 7396 TTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTT 7337 Query 151314 CGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGC 151373 | || || || |||||| || ||||| | ||||| ||| || ||||| || || Sbjct 7336 CATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAA 7277 Query 151374 AATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGG 151433 || |||||| ||||| || || || || || || |||||||| || || || || | Sbjct 7276 TGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAG 7217 Query 151434 TTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGC---ATTTGCTCGC 151490 |||| ||||| ||| || || | ||||| | || || | ||| | Sbjct 7216 TTTCAACTTGAGATTCAATTATAGCAAACCATAATGAA----CGTGCTTTAATTGTTTTA 7161 Query 151491 GAAAC-TGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCA--CCATACG 151547 | | | |||| || ||||| | | || | ||||| | ||| |||||| Sbjct 7160 TTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACA 7101 Query 151548 TATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAA 151607 | | | | | |||||| | | ||||||||||||||||| || | | |||||| Sbjct 7100 T-TAAATAAAC-CAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAA 7043 Query 151608 CGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTG- 151666 | ||||||||||||| ||| |||| ||| | ||| | | ||||| | || | || Sbjct 7042 CACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGC-ACGATGT 6984 Query 151667 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGT 151726 ||||| | ||| | ||| | | ||||| || | ||| || |||||| ||| Sbjct 6983 TCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGT 6924 Query 151727 TCAACGTACACTGCTTGGGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCACC 151783 || | || | || || ||| ||| || ||||||||||| || | | | Sbjct 6923 TCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCA 6864 Query 151784 ATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT---AG-A 151839 | ||||||||| || || | |||||||| | || | | | || || || || | Sbjct 6863 ACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCA 6804 Query 151840 TTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCGCCGTG 151899 || || | || ||| |||| || | || || | ||||||||| || | | Sbjct 6803 ATTGATGTACCTTTTG----AACGTATGCAATGTACATTTATTCCAATACCACCAGCATT 6748 Query 151900 TTTAGAGATCATGGCGCAATCGTTTAA-TGTGTTATAGATGCCGCGAATGCTATCGCTTT 151958 ||| || ||||| |||| || ||| || || ||| | || || ||| ||| Sbjct 6747 TTTTGATATCATTGCGC-ATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAA 6689 Query 151959 CCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCCGGCAGCGAACATGG 152018 |||| || |||| ||||||||| | || || | || | ||||| || | | Sbjct 6688 CCATTGTTAATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATG 6629 Query 152019 TTGGGCTTGCGTGCGT-GTACATTTTTCTGCTCAAAAATTTATAGGATTTTATGGCACTA 152077 |||| ||| || || | | ||||| | |||| ||||| | || || || | Sbjct 6628 TTGGTGATGCATGAGTAAAATAACGTTCTGAT-AAAAGATTATAAGTTTCAATAACAGCA 6570 Query 152078 TCAATGTCGTCTCCAAAGATTCCTAAAGCTATACGCATGTGCATATGTTGAATCGTTTCG 152137 ||||| | || || || || | || | |||||| ||||||||| |||| Sbjct 6569 TCAATATTATCACCGTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCA 6510 Query 152138 GCAACCTTTTCATTAATTTTTATCAAATAACCATTTTTTAGAGTTTGATATCCAAAGTAA 152197 |||| || |||||||||||| |||||| ||| || |||| | | ||||| ||| Sbjct 6509 GCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAA 6450 Query 152198 TTGTA 152202 || || Sbjct 6449 TTATA 6445 >seq116239 Length=11340 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| ||||||| ||| ||||| ||||| ||||||||||| | Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || | ||| || |||||| | |||| |||||| ||||| || || Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| ||| ||| | | ||| | ||||| | || || || Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || || |||||||| || || ||||| Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 >seq34035 Length=19351 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | || | |||||||| | || || |||||||| ||||| ||||| Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || || |||||||||||||| | || | |||||| ||||| ||||| Sbjct 10523 AAGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || |||||||| || || || ||| | | ||| | || || | |||||| || Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||||| || || | ||||| || ||||| |||||| Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATA 10356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487730000200800