Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 132 5e-26
seq116239 116 4e-21
seq34035 100 3e-16
>seq69808
Length=9325
Score = 132 bits (146), Expect = 5e-26
Identities = 911/1445 (63%), Gaps = 36/1445 (2%)
Strand=Plus/Minus
Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838
|| |||||||| ||||| || | |||||||| || | || || ||||| ||
Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815
Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898
| | ||| ||||| || | || | || || || ||| ||| | | ||| | |
Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755
Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT-T 150957
|||| ||| ||| ||||||||| ||| ||||| | ||| |||| ||| || |
Sbjct 7754 CATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695
Query 150958 GCTACCGGCAAACGTGCTATAAGGCTCAC-TAACAGATGCCAGTTCGTAACTGGCCTCGA 151016
| | || || | || ||| | || ||| | || | |||| |||| ||||| |
Sbjct 7694 GAT-CCATCATATGTTTCATATGAACCATATAATTCA-GCTAATTCGCAACTAGCCTCTA 7637
Query 151017 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 151076
||| ||| ||| | |||||| ||||||| ||| ||| || | || ||
Sbjct 7636 ATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTT 7577
Query 151077 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGG 151136
| || || |||| | || ||||||||| || || ||||| | ||| || || || |
Sbjct 7576 CATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTG 7517
Query 151137 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAA 151196
| ||||| || | ||| ||||||||||| | | ||| || |||| ||||||||
Sbjct 7516 GTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAA 7457
Query 151197 TTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG 151256
||||||||||| | | ||| ||| || | | | || ||||||| |
Sbjct 7456 TTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATT 7397
Query 151257 TATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTT 151313
| | || | || | | | |||| | ||||| || |||| |||||| || || |||
Sbjct 7396 TTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTT 7337
Query 151314 CGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGC 151373
| || || || |||||| || ||||| | ||||| ||| || ||||| || ||
Sbjct 7336 CATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAA 7277
Query 151374 AATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGG 151433
|| |||||| ||||| || || || || || || |||||||| || || || || |
Sbjct 7276 TGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAG 7217
Query 151434 TTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGC---ATTTGCTCGC 151490
|||| ||||| ||| || || | ||||| | || || | ||| |
Sbjct 7216 TTTCAACTTGAGATTCAATTATAGCAAACCATAATGAA----CGTGCTTTAATTGTTTTA 7161
Query 151491 GAAAC-TGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCA--CCATACG 151547
| | | |||| || ||||| | | || | ||||| | ||| ||||||
Sbjct 7160 TTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCATACA 7101
Query 151548 TATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAA 151607
| | | | | |||||| | | ||||||||||||||||| || | | ||||||
Sbjct 7100 T-TAAATAAAC-CAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAA 7043
Query 151608 CGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTG- 151666
| ||||||||||||| ||| |||| ||| | ||| | | ||||| | || | ||
Sbjct 7042 CACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGC-ACGATGT 6984
Query 151667 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGT 151726
||||| | ||| | ||| | | ||||| || | ||| || |||||| |||
Sbjct 6983 TCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGT 6924
Query 151727 TCAACGTACACTGCTTGGGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCACC 151783
|| | || | || || ||| ||| || ||||||||||| || | | |
Sbjct 6923 TCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCA 6864
Query 151784 ATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT---AG-A 151839
| ||||||||| || || | |||||||| | || | | | || || || || |
Sbjct 6863 ACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCA 6804
Query 151840 TTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCGCCGTG 151899
|| || | || ||| |||| || | || || | ||||||||| || | |
Sbjct 6803 ATTGATGTACCTTTTG----AACGTATGCAATGTACATTTATTCCAATACCACCAGCATT 6748
Query 151900 TTTAGAGATCATGGCGCAATCGTTTAA-TGTGTTATAGATGCCGCGAATGCTATCGCTTT 151958
||| || ||||| |||| || ||| || || ||| | || || ||| |||
Sbjct 6747 TTTTGATATCATTGCGC-ATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAA 6689
Query 151959 CCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCCGGCAGCGAACATGG 152018
|||| || |||| ||||||||| | || || | || | ||||| || | |
Sbjct 6688 CCATTGTTAATAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATG 6629
Query 152019 TTGGGCTTGCGTGCGT-GTACATTTTTCTGCTCAAAAATTTATAGGATTTTATGGCACTA 152077
|||| ||| || || | | ||||| | |||| ||||| | || || || |
Sbjct 6628 TTGGTGATGCATGAGTAAAATAACGTTCTGAT-AAAAGATTATAAGTTTCAATAACAGCA 6570
Query 152078 TCAATGTCGTCTCCAAAGATTCCTAAAGCTATACGCATGTGCATATGTTGAATCGTTTCG 152137
||||| | || || || || | || | |||||| ||||||||| ||||
Sbjct 6569 TCAATATTATCACCGTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCA 6510
Query 152138 GCAACCTTTTCATTAATTTTTATCAAATAACCATTTTTTAGAGTTTGATATCCAAAGTAA 152197
|||| || |||||||||||| |||||| ||| || |||| | | ||||| |||
Sbjct 6509 GCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAA 6450
Query 152198 TTGTA 152202
|| ||
Sbjct 6449 TTATA 6445
>seq116239
Length=11340
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || |||| ||| | ||| ||||||| ||| ||||| ||||| ||||||||||| |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||| || || || | ||| || |||||| | |||| |||||| ||||| || ||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|||||||| ||||| ||| ||| ||| | | ||| | ||||| | || || ||
Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | || || || || || |||||||| || || |||||
Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
>seq34035
Length=19351
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | || | |||||||| | || || |||||||| ||||| |||||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | || | || || |||||||||||||| | || | |||||| ||||| |||||
Sbjct 10523 AAGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| |||||||| || || || ||| | | ||| | || || | |||||| ||
Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|||| || | ||||| || || | ||||| || ||||| ||||||
Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATA 10356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 487730000200800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |