Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq30817 167 6e-37 >seq30817 Length=4284 Score = 167 bits (184), Expect = 6e-37 Identities = 218/302 (72%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 38193 AATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGA 38252 |||||| |||||||| ||||| || || || | || ||| |||| || |||||||| || Sbjct 29 AATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGGCAAGATCCTGA 88 Query 38253 GGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGT 38312 | || ||| | || | |||||| || ||||||||| | || | ||||| ||||| Sbjct 89 AATCCGTTATATGCCTAACGGCGGAGCGGTGGCAAACCTGACTCTGGCAACTTCTGAAAG 148 Query 38313 TTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTT 38372 |||||| || ||||||||||| || || ||||| || |||||||| || | | Sbjct 149 TTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCGAATGGCACCGTGTGGTTAT 208 Query 38373 GTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATAT 38432 || || || | ||||||||||| || |||||||| |||||| || || || ||||| Sbjct 209 TTTCGGCAAATTAGCTGAAGTTGCAGGGGAATACCTGAAAAAAGGCTCACAAGTCTATAT 268 Query 38433 TGAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACACAAT 38492 ||||| | | |||| || |||| ||| ||||||||||| || || || |||| Sbjct 269 CGAAGGTTCGTTACAAACACGTAAATGGCAGGACCAAAGCGGTCAAGATCGCTATACAAC 328 Query 38493 AG 38494 || Sbjct 329 AG 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132688838341668