Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 190 4e-43
seq116239 167 5e-36
seq98857 125 1e-23
seq8255 113 9e-20
seq82763 111 3e-19
seq52648 102 2e-16
>seq34035
Length=19351
Score = 190 bits (210), Expect = 4e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||||| | || || ||||| |||| ||| || ||||| || || |||||||||||
Sbjct 10584 ACCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGA 10525
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| ||| || || || |||||||| ||||| || |||| | |||||||||||||||
Sbjct 10524 TAAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||| |||||||| ||||| ||||| ||||||||||| |||||| ||||| ||
Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||| ||||| ||||| | || || ||||||||||||||
Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357
>seq116239
Length=11340
Score = 167 bits (184), Expect = 5e-36
Identities = 167/217 (77%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| || || || || ||||| || || || || ||||| || | | |||||
Sbjct 4563 ACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACC 4622
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || | ||| ||||||||||| || | | |||||||||||| || || ||||||||
Sbjct 4623 ATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTT 4682
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||||||||| ||||||||||| || ||| || || || ||||| || ||
Sbjct 4683 GTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAAT 4742
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| || || || || || |||||||| |||||||||
Sbjct 4743 TGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATT 4779
>seq98857
Length=3708
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679
|| || || || || ||||||||| | | || |||| || |||||||| | | |
Sbjct 585 TCCTTTTGGATGTTGTAATCAGATCATGTACGACTATCTTAGAGCTGTTTTCCTTCGACG 644
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|||| ||||||||||||| |||| ||||| ||||||||||||||||| || || | ||||
Sbjct 645 ATTAATCTTTGTTGATCTAGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAATATTT 704
Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799
||||| |||| |||||| |||| | || || || || | || || ||||| |||
Sbjct 705 TCAATTCTATCGAAAGGTTCAACTTTGAGGGTGATTGTTTTTCTAGTTAATGTCTTAACA 764
Query 82800 AATATCTGCATT 82811
|| || ||||||
Sbjct 765 AAGATTTGCATT 776
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
||||||||| | | || |||| ||||||||||| | ||||||| ||||||||||
Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|||||||| ||||| ||||| ||||| |||||||| || ||||||||||| |||||
Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792
||||| || || | || || || || || || || ||
Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160
Score = 105 bits (116), Expect = 1e-17
Identities = 123/167 (74%), Gaps = 7/167 (4%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || |||| |||||||| || || | || || |||| ||||||| |||
Sbjct 789 CGGAGTACCAAGTTAAGAGTAGACTCCTTTTAGATGTTGTAATTAGATAGAGCATGACC- 847
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|||| |||||| | |||||||| ||| |||||||||||||| ||| ||||||
Sbjct 848 ------AGTTATTTTCCTGGAAAGATTAATCTATGTTGATCTGGAGGAATTTGCTCCTTA 901
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||||| |||| |||||| |||||||||| |||| |||||| ||
Sbjct 902 TCTTGGATCTATGCTTTACCATTTTCAATTGTATTGGAAGGTTCAAC 948
Score = 98.7 bits (108), Expect = 2e-15
Identities = 100/128 (78%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652
|| || || || || || |||||||| ||||| || ||||| || ||||||||| | | |
Sbjct 1007 AAGCGGAGTACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAGAGTACGA 1066
Query 82653 CCGT--CTTCTAGTTGTTTTCCAGCAAAGATT-AGTCTTTGTTGATCTGGAGGTATTCCT 82709
| | || | ||||||||||| || |||||| | ||| |||| ||||||||| | ||||
Sbjct 1067 TCATATCTACAAGTTGTTTTCCTGCGAAGATTTATTCTGTGTTAATCTGGAGGAAATCCT 1126
Query 82710 TCCTTATC 82717
||||||||
Sbjct 1127 TCCTTATC 1134
>seq8255
Length=4873
Score = 113 bits (124), Expect = 9e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||| || || ||||| || || || || ||||| | || | | |||
Sbjct 582 ACGAAGGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACC 523
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|||| | |||||| ||||| || |||| ||||| ||||| || | || ||| ||
Sbjct 522 ATCTTTCAATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTT 463
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||| || | |||| |||||| ||| || || | ||||| ||||||||||| ||
Sbjct 462 GTCTAGAATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGAT 403
Query 82775 CGTCTTGCCTGTCAA 82789
||||| || |||||
Sbjct 402 GGTCTTACCAGTCAA 388
>seq82763
Length=7752
Score = 111 bits (122), Expect = 3e-19
Identities = 196/283 (69%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 198170 AATTATAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGT 198229
||||||| |||||||| | |||||||||||||||| ||| |||||| |||| |||| |
Sbjct 3998 AATTATACGAAGAGAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATAT 4057
Query 198230 ACAGTCTACT-CACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAA 198288
| | | || | |||||| || ||| | | || || || ||| |||
Sbjct 4058 CAAAGGTGTTGCAAGT-TGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGAA 4116
Query 198289 AGTATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATG 198348
||||| || | | | || | ||| | |||| ||||| ||| ||||||
Sbjct 4117 GTTATATTTACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAATT 4176
Query 198349 CATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGG 198408
|| | ||||| || || || |||||||||||||||| |||||||||||||||| ||||
Sbjct 4177 CAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGG 4236
Query 198409 CTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTT 198451
|||| || || | |||||||| | |||| ||| | || ||
Sbjct 4237 CTAAGAAAATTTTAGAATGGACTGAATCACCTGAAAAAGCATT 4279
>seq52648
Length=20403
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| |||| | || ||| |||| || |||||| | ||||| || | || || | | |
Sbjct 10456 ACCACCTCGTAGCCGAAGAGCTAAATGGAGAGTATACTCTTTTTGAAGGTTGTAGTTAAA 10515
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|||| | | ||| | ||| || |||||| | ||||||| || ||||||||||||||||||
Sbjct 10516 TAGAGTACGACCATATTCAAGCTGTTTTTCTGCAAAGAATAATCTTTGTTGATCTGGAGG 10575
Query 82703 TATTCCTTCCTTATCTTGAATCTTTG 82728
||||| | || ||| || |||||||
Sbjct 10576 AATTCCCTTCTCATCATGGATCTTTG 10601
Score = 102 bits (112), Expect = 2e-16
Identities = 108/140 (77%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
|||||||| |||| || || | || ||||||||| | | ||| | || || ||||||
Sbjct 10615 AGAGTAGA--CTTTTTGAATGTG-TAGTCAGATAGAGTACGACCATTATCAAGCTGTTTT 10671
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
| ||||| |||| |||||||||||||| ||| |||| ||||||| ||| ||||||||
Sbjct 10672 TCGGCAAATATTAATCTTTGTTGATCTGAAGGAATTCTCTCCTTATTTTGGATCTTTGCC 10731
Query 82731 TTTACATTTTCAATCGTATC 82750
| ||||||| ||| | |||
Sbjct 10732 TAAACATTTTTAATTGCATC 10751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980150406666666
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