Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq34035 190 4e-43 seq116239 167 5e-36 seq98857 125 1e-23 seq8255 113 9e-20 seq82763 111 3e-19 seq52648 102 2e-16 >seq34035 Length=19351 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | || || ||||| |||| ||| || ||||| || || ||||||||||| Sbjct 10584 ACCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGA 10525 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||| || || || |||||||| ||||| || |||| | ||||||||||||||| Sbjct 10524 TAAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| |||||||| ||||| ||||| ||||||||||| |||||| ||||| || Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| ||||| ||||| | || || |||||||||||||| Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357 >seq116239 Length=11340 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || || ||||| || || || || ||||| || | | ||||| Sbjct 4563 ACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACC 4622 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| ||||||||||| || | | |||||||||||| || || |||||||| Sbjct 4623 ATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTT 4682 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||||||||| ||||||||||| || ||| || || || ||||| || || Sbjct 4683 GTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAAT 4742 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || |||||||| ||||||||| Sbjct 4743 TGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATT 4779 >seq98857 Length=3708 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || || || || || ||||||||| | | || |||| || |||||||| | | | Sbjct 585 TCCTTTTGGATGTTGTAATCAGATCATGTACGACTATCTTAGAGCTGTTTTCCTTCGACG 644 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 |||| ||||||||||||| |||| ||||| ||||||||||||||||| || || | |||| Sbjct 645 ATTAATCTTTGTTGATCTAGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAATATTT 704 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| |||| |||||| |||| | || || || || | || || ||||| ||| Sbjct 705 TCAATTCTATCGAAAGGTTCAACTTTGAGGGTGATTGTTTTTCTAGTTAATGTCTTAACA 764 Query 82800 AATATCTGCATT 82811 || || |||||| Sbjct 765 AAGATTTGCATT 776 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 ||||||||| | | || |||| ||||||||||| | ||||||| |||||||||| Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 |||||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 ||||| || || | || || || || || || || || Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160 Score = 105 bits (116), Expect = 1e-17 Identities = 123/167 (74%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || |||| |||||||| || || | || || |||| ||||||| ||| Sbjct 789 CGGAGTACCAAGTTAAGAGTAGACTCCTTTTAGATGTTGTAATTAGATAGAGCATGACC- 847 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||| |||||| | |||||||| ||| |||||||||||||| ||| |||||| Sbjct 848 ------AGTTATTTTCCTGGAAAGATTAATCTATGTTGATCTGGAGGAATTTGCTCCTTA 901 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| |||| |||||| |||||||||| |||| |||||| || Sbjct 902 TCTTGGATCTATGCTTTACCATTTTCAATTGTATTGGAAGGTTCAAC 948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 || || || || || || |||||||| ||||| || ||||| || ||||||||| | | | Sbjct 1007 AAGCGGAGTACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAGAGTACGA 1066 Query 82653 CCGT--CTTCTAGTTGTTTTCCAGCAAAGATT-AGTCTTTGTTGATCTGGAGGTATTCCT 82709 | | || | ||||||||||| || |||||| | ||| |||| ||||||||| | |||| Sbjct 1067 TCATATCTACAAGTTGTTTTCCTGCGAAGATTTATTCTGTGTTAATCTGGAGGAAATCCT 1126 Query 82710 TCCTTATC 82717 |||||||| Sbjct 1127 TCCTTATC 1134 >seq8255 Length=4873 Score = 113 bits (124), Expect = 9e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || ||||| || || || || ||||| | || | | ||| Sbjct 582 ACGAAGGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACC 523 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||| | |||||| ||||| || |||| ||||| ||||| || | || ||| || Sbjct 522 ATCTTTCAATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTT 463 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||| || | |||| |||||| ||| || || | ||||| ||||||||||| || Sbjct 462 GTCTAGAATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGAT 403 Query 82775 CGTCTTGCCTGTCAA 82789 ||||| || ||||| Sbjct 402 GGTCTTACCAGTCAA 388 >seq82763 Length=7752 Score = 111 bits (122), Expect = 3e-19 Identities = 196/283 (69%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 198170 AATTATAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGT 198229 ||||||| |||||||| | |||||||||||||||| ||| |||||| |||| |||| | Sbjct 3998 AATTATACGAAGAGAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATAT 4057 Query 198230 ACAGTCTACT-CACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAA 198288 | | | || | |||||| || ||| | | || || || ||| ||| Sbjct 4058 CAAAGGTGTTGCAAGT-TGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGAA 4116 Query 198289 AGTATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATG 198348 ||||| || | | | || | ||| | |||| ||||| ||| |||||| Sbjct 4117 GTTATATTTACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAATT 4176 Query 198349 CATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGG 198408 || | ||||| || || || |||||||||||||||| |||||||||||||||| |||| Sbjct 4177 CAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGG 4236 Query 198409 CTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTT 198451 |||| || || | |||||||| | |||| ||| | || || Sbjct 4237 CTAAGAAAATTTTAGAATGGACTGAATCACCTGAAAAAGCATT 4279 >seq52648 Length=20403 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | || ||| |||| || |||||| | ||||| || | || || | | | Sbjct 10456 ACCACCTCGTAGCCGAAGAGCTAAATGGAGAGTATACTCTTTTTGAAGGTTGTAGTTAAA 10515 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | | ||| | ||| || |||||| | ||||||| || |||||||||||||||||| Sbjct 10516 TAGAGTACGACCATATTCAAGCTGTTTTTCTGCAAAGAATAATCTTTGTTGATCTGGAGG 10575 Query 82703 TATTCCTTCCTTATCTTGAATCTTTG 82728 ||||| | || ||| || ||||||| Sbjct 10576 AATTCCCTTCTCATCATGGATCTTTG 10601 Score = 102 bits (112), Expect = 2e-16 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 |||||||| |||| || || | || ||||||||| | | ||| | || || |||||| Sbjct 10615 AGAGTAGA--CTTTTTGAATGTG-TAGTCAGATAGAGTACGACCATTATCAAGCTGTTTT 10671 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 | ||||| |||| |||||||||||||| ||| |||| ||||||| ||| |||||||| Sbjct 10672 TCGGCAAATATTAATCTTTGTTGATCTGAAGGAATTCTCTCCTTATTTTGGATCTTTGCC 10731 Query 82731 TTTACATTTTCAATCGTATC 82750 | ||||||| ||| | ||| Sbjct 10732 TAAACATTTTTAATTGCATC 10751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980150406666666