Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq82763 109 1e-18 >seq82763 Length=7752 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 182853 AATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGT 182912 |||| || |||||||| |||||||||||||||||| ||| |||||| |||| |||| | | Sbjct 3998 AATTATACGAAGAGAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATAT 4057 Query 182913 TCAGTCTACT-CACGCATGGGCTAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAA 182971 | | | || | |||||| || ||| | | || || || ||| ||| Sbjct 4058 CAAAGGTGTTGCAAGT-TGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGAA 4116 Query 182972 AGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATG 183031 ||||| || | | | || | ||| || |||| ||||| ||| |||||| Sbjct 4117 GTTATATTTACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAATT 4176 Query 183032 CATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGG 183091 || | ||||| || || | |||||||||||||||| |||||||| ||||||| |||| Sbjct 4177 CAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGG 4236 Query 183092 CTAAAAAGATACTTGAATGGAC 183113 |||| || || | |||||||| Sbjct 4237 CTAAGAAAATTTTAGAATGGAC 4258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901905958843840