Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq26843 95.1 2e-14
seq102307 86.0 8e-12
>seq26843
Length=8439
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2776 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2835
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 2836 CCCGCCGGGGAG 2847
Score = 93.3 bits (102), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 2775 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2834
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 2835 CCCCGCCGGGGAG 2847
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2847 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2788
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 2787 TACTACCGAGGA 2776
>seq102307
Length=8650
Score = 86.0 bits (94), Expect = 8e-12
Identities = 65/75 (87%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| ||||||||||||| |||| | | ||||| | |||||||||||||||||||
Sbjct 7804 AGTCCTCGGTAGTATAGTGGTAAGTATCCNC--CTGTCACGCGGGAGACCGGGGTTCGAT 7747
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 7746 TCCCCGCCGGGGAGG 7732
Score = 84.2 bits (92), Expect = 3e-11
Identities = 62/72 (86%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| | | ||||| | |||||||||||||||||||||
Sbjct 7802 TCCTCGGTAGTATAGTGGTAAGTATCCNC--CTGTCACGCGGGAGACCGGGGTTCGATTC 7745
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 7744 CCCGCCGGGGAG 7733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 651757046315360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |