Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq26843 95.1 2e-14 seq102307 86.0 8e-12 >seq26843 Length=8439 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2776 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2835 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2836 CCCGCCGGGGAG 2847 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 2775 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2834 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 2835 CCCCGCCGGGGAG 2847 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2847 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2788 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 2787 TACTACCGAGGA 2776 >seq102307 Length=8650 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| | | ||||| | ||||||||||||||||||| Sbjct 7804 AGTCCTCGGTAGTATAGTGGTAAGTATCCNC--CTGTCACGCGGGAGACCGGGGTTCGAT 7747 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 7746 TCCCCGCCGGGGAGG 7732 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| | | ||||| | ||||||||||||||||||||| Sbjct 7802 TCCTCGGTAGTATAGTGGTAAGTATCCNC--CTGTCACGCGGGAGACCGGGGTTCGATTC 7745 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 7744 CCCGCCGGGGAG 7733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651757046315360