Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq78216 95.1 2e-14 >seq78216 Length=9244 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 140425 TACACACAAATAATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAA 140484 || ||| ||| ||| | |||||| |||| | ||||| ||||| || || | | || Sbjct 5527 TAAACAGAAA-AATGTAGTTCACAGAGATTTGAAACTTGGAAATATTCTTGTAAATAAAA 5585 Query 140485 AGTTAAAAACTAGT-AAACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAAC 140543 | ||||| ||| ||| | | |||||| ||||||||||| | ||| | ||| | Sbjct 5586 TCTGTAAAAC-AGTGAAAATTACAAATTTTGGTTTAGGAAAATATCTTGTTAATGATG-C 5643 Query 140544 GATCTT-TTAAAAGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGG 140602 | ||| || | |||||| || | || |||||||| || || |||||| | || || Sbjct 5644 TAGCTTATTGCATGATCAAAAAGGTACACCTGCATATATATCACCTGATGTTGTTAGTGG 5703 Query 140603 TAAACCATATTTAGGTAAACCGTCTGATATGTGGGCGCTTGGAGT 140647 |||||||||| ||| ||||| |||||||||||||| | ||||| Sbjct 5704 TAAACCATATAAAGGAAAACCATCTGATATGTGGGCATTGGGAGT 5748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703408442419680