Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 316 5e-81
seq981 154 3e-32
seq122296 104 6e-17
seq34095 104 6e-17
seq75630 84.2 5e-11
>seq69808
Length=9325
Score = 316 bits (350), Expect = 5e-81
Identities = 585/855 (68%), Gaps = 5/855 (1%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||||||||| ||||| | ||| | | ||||| | | ||||| | || |
Sbjct 6451 TATTTTGGTTTTAAAACATTAGAAAGATCATATTTGTTAAAAATTAATGGTAAAATTGCT 6510
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
||| | || ||||| ||||| | |||||||| ||||||| || || || ||||| |
Sbjct 6511 GAAAGACCACAACATATGTTAATGCGTGTTGCAGTTGGTATACACGGTGATAATATTGAT 6570
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483
|||||||||||| |||| || | ||| || | || |||||| | || ||
Sbjct 6571 GCTGTTATTGAAACTTATAATCTTTTATCAGAACGTTATTTTACTCATGCATCACCAACA 6630
Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543
||||| |||| ||| | | ||||| | || || ||| | || |||
Sbjct 6631 TTATTTGCTGCAGCAACACGTCGTCCTCAATTATCATCATGTTTTTTATTAACAATGGTT 6690
Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603
|||||||| ||||||||||| | | | | || || || || | || || |||||
Sbjct 6691 GATGATTCAATTGAAGGTATATTTAAATCAATTGAACAATGCGCAATGATATCAAAAAAT 6750
Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663
|||| || ||||| || | || ||| || || |||||||| || || ||
Sbjct 6751 GCTGGTGGTATTGGAATAAATGTACATTGCATACGTTCAAAAGGTACATCAATTGCTGGC 6810
Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723
| || ||| |||| ||| | || ||||||||| | ||||| || | ||| | |
Sbjct 6811 ACAAATGGTATATCAAATGGTTTAGTACCAATGTTACGTGTCTTTAATAATGTTGCTAGA 6870
Query 110724 TATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780
||||| ||||||||||||| | || || |||||||||| ||| | ||||| |||
Sbjct 6871 TATGTTGATCAAGGTGGTAATAAACGACCAGGTGCATTTGCTATTTATTTAGAACCATGG 6930
Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840
||| ||||||| |||||||| ||| | | |||||| ||| |||||||| |
Sbjct 6931 CATGCAGATATTTTTGAATTTTTAAATTTAAAAAAAAATACTGGAACAGAAGAACATCGT 6990
Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900
|| | |||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 6991 GCTAGGGATTTATTTTATGCAATGTGGATTCCAGATTTATTTATGAAACGTGTTGAAGCT 7050
Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960
||| | ||||| | |||||||| ||| | ||||||| ||| | |||||| ||
Sbjct 7051 GATGATAATTGGTCATTAATGTGTCCACATAAATGTCCTGGTTTATTTAATGTATGGGGT 7110
Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAAT 111019
|| | ||||| | ||||| ||||||||||| ||||| | | | |||| |||
Sbjct 7111 GAAAAATTTGATCAACTTTATATTAAATATGAAAATGAAGGTCGTGCTAATAAAAC-AAT 7169
Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079
| ||| | | | ||||| || ||||||| |||||||||||||| ||||| ||
Sbjct 7170 TAAAGCACGTTCATTATGGTTTGCTATAATTGAATCTCAAGTTGAAACTGGTACTCCATA 7229
Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139
||| || ||||||||| |||||| ||| ||||||| || | || || |||||
Sbjct 7230 TATGTTATATAAAGATGCGTGTAATCGAAAAAGTAATCAACAAAACATTGGCACCATTAA 7289
Query 111140 GTCTAGTAATTTGTG 111154
| ||||||| ||||
Sbjct 7290 ATGTAGTAATCTGTG 7304
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635
|||| |||||| || ||||| | || | |||||||||||||| | | |||||
Sbjct 7421 AAGTTACAAAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTT 7480
Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695
| | | |||||||| | || ||| ||| |||||||||| |||||||||||||| |
Sbjct 7481 TACCAGAAGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCT 7540
Query 112696 TAGCTGATGTATTTATGATGATGCG 112720
||||||||| |||||| | |||||
Sbjct 7541 TAGCTGATGCATTTATTTTAATGCG 7565
>seq981
Length=15247
Score = 154 bits (170), Expect = 3e-32
Identities = 677/1042 (65%), Gaps = 82/1042 (8%)
Strand=Plus/Plus
Query 278651 AGATGGGAAATTGCTCTATCACCTTCTGAG---GAATTTAAACAAGTATCTTTTGTTAAT 278707
||||||||| | ||| | |||| || || | ||| ||||||| || |||||||||
Sbjct 2544 AGATGGGAAGTAGCTGTTGCACCATCAGATCGTGGTTTTCAACAAGTTTCATTTGTTAAT 2603
Query 278708 GGTATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAATAAGATTGTGAAG 278767
||| || |||||||||| |||||||||| ||||| || || ||||| ||
Sbjct 2604 TCAATTGCAACAACAAAAGGTGGTCGACATGTTGATAATGTTGTTGATGGTATTGTTAAA 2663
Query 278768 AAG---ATTTCAGAGATAATTGAGAAGAAGGAAAAGATTAAGGTAAAATCAAATAATATT 278824
| ||| || ||| | | || || ||| || || ||| || ||| || ||
Sbjct 2664 CAATTAATTGAAGTATTAAATAAAAAAAAT-AAAGGAGGAAT-TAATATAAAACCAT-TT 2720
Query 278825 AAAGAAC------ACTTGTTTATATTTGTAAATTGTTTGATTATAAATCCTTCATTTGAT 278878
||| || || | | |||||| |||||| ||| ||| ||||||| ||||||||
Sbjct 2721 CAAGTACGTACTCACATTTGGATATTTATAAATTCTTTAATTGTAAATCCAACATTTGAT 2780
Query 278879 TCGCAAACGAAAGATTTCCTAACTACGAT-TAGCA-GTAAA----TTCGGAAGTAAGTTT 278932
|||||||| ||||| || || || | ||| | ||| || ||| || | |
Sbjct 2781 TCGCAAACAAAAGA------AAATATGACATTGCAAGCAAAAAGTTTTGGATCAAAATGT 2834
Query 278933 GATTTTGGAGATAAGTTTTATCGTGATTTAGCAAAAACAGATATTATC-AAGAA-TATTA 278990
| ||||| ||| || | | ||||| ||| ||| | ||| | | |||
Sbjct 2835 AGCCTATCTGATAAATTTATTCAATCTGTTTCAAAATCAGGAATTGTTGAAGCAGTTTTA 2894
Query 278991 TCAATACTCATAATTTTAA--AGAGAATAAGCTAACAAATAAAAAGAATGATGGCAAGAA 279048
||| | || ||||| || | | ||| | || | ||||| || || |||||
Sbjct 2895 TCA-TGGGCAAAATTTAAAGCACAAAATGATTTAGC---TAAAACGAGTGGAAAAAAGAA 2950
Query 279049 GACCAATAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAA 279108
|| || ||||| | ||||| |||||| | || ||||| || |||||| ||
Sbjct 2951 TACTAA--AATTAAA-GGTATACCAAAATTAGAAGATGCTAATGAAGCTGGAAAAAAAAA 3007
Query 279109 ATCTCAAGAATGTGCT-TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTG 279167
| || |||| | |||| | | ||||| |||||||| ||| | || || ||
Sbjct 3008 TGCACATTTATGTACGCTTATAT-TAACTGAAGGAGATTCAGCTAAGTCTTTAGCTATAT 3066
Query 279168 CTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAA 279227
|||||||| |||| ||||||| ||| | ||||| |||||||| ||| | |||||| ||
Sbjct 3067 CTGGTTTAGGTGTTGTTGGTCGCGATCATTATGGTGTATTTCCATTACGTGGTAAATTAT 3126
Query 279228 TTAATGCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTG 279287
| || | ||| || | ||||| |||| ||| | || ||||| |
Sbjct 3127 TAAACGTTCGAGAGG------CCACACA--------TAAA-CAAATTCTTGAAAATGCCG 3171
Query 279288 AATTGATTAATTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAA------AG 279341
|| | | |||||||| |||| | || ||| | | |||||||||| ||
Sbjct 3172 AAATAAATAATTTAATTAAAATTCTTGGCTTACAATATAAAAAAAAATACATGACCTTAG 3231
Query 279342 AT-ACATCAAG--TTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATG 279398
| | | ||| | |||||||||| ||| | || ||| |||| || |||||| |||||
Sbjct 3232 AGGATTTGAAGAGTCTACGATATGGAAAATTAATGATTATGACTGATCAAGATCAAGATG 3291
Query 279399 GAAGTCACATTAAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT-- 279456
| || || ||||| | || |||||| || |||| ||||||||||||||
Sbjct 3292 GTTCCCATATAAAAGGTCTTTTAATTAATTTTATTCATACAAATTGGCCAGAATTGTTAC 3351
Query 279457 GAATCAAAATTTTGTAAGTGTGTTTCA-AACACCAATTATTAAGGCAACTAAAGGTAAAA 279515
| | | ||||| ||| |||| ||||||||| |||| | ||| ||| ||||
Sbjct 3352 GTTTACCATTTTTGGAAG---AATTCATTACACCAATTGTTAAAGTAACAAAA---AAAA 3405
Query 279516 AAGAAGAAGT---ATTTTATTCATTG-CAGAAGTTTGAACAATGGAAAGATTCAGTTGAG 279571
|||| ||| | |||||||||||| ||||| |||||| |||||||| ||
Sbjct 3406 AAGAGGAACTTTCTTTTTATTCATTGCCAGAA-TTTGAAGAATGGAAATTAGCAACACCA 3464
Query 279572 AAT--TCAGCCTCATTCCATACCAAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGG 279629
||| | | || || ||| ||||| | |||||||||| || || | |||| |
Sbjct 3465 AATCATAAAACTTATAAAATA--AAGTACTACAAAGGTTTAGGTACTTCAACATCTAAAG 3522
Query 279630 AAGCAAAAGAATATTTTAAAAA 279651
|||||||||||||||| ||||
Sbjct 3523 AAGCAAAAGAATATTTCGAAAA 3544
>seq122296
Length=10093
Score = 104 bits (114), Expect = 6e-17
Identities = 393/607 (65%), Gaps = 20/607 (3%)
Strand=Plus/Plus
Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945
||||||| |||| | || || || | ||||| || || |||| || | |||
Sbjct 5418 TTACAATTTCATGTAGCTACTTTTGTTGATAACGACATGCCTGGCATGCCTAAAGCAATG 5477
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| || || | |||||||| | ||||| | || | ||||| ||||| || ||
Sbjct 5478 CAAAAGTCAGGTAAGCCTTTAAAAGCTATTAAGGCTCGTTTGAAAGGAAAAGAAGGGCGA 5537
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
|||||||||||| | |||||||||||||| || || ||| | | ||||||||| |||
Sbjct 5538 ATTCGAGGTAATTTGATGGGAAAACGTGTCGACTTCTCTGCTCGTACTGTAATCACTCCT 5597
Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125
||| | | | || | || || | || || |||| ||||| ||| |||||
Sbjct 5598 GATCCAAACTTGCGTATAGATCAAGTTGGTGTACCAAGATCCATTGCACAAAATTTAACA 5657
Query 305126 TTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTAATGGA 305185
||||| || ||||| | |||||| | || | | |||| |||
Sbjct 5658 TTTCCTGAATTAGTTACTCCGTTTAATATTGACAGAATGCAAGAATTAGTTCGCCGAGGA 5717
Query 305186 AATA-GCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGACAATATC 305244
||| |||| ||||| || || | || | | |||| | | |||| | |||
Sbjct 5718 AATTCGCAA-TATCCGGGAGCAAAATATATTGTTCGAGACAATGGAGA-AAGAATAGATC 5775
Query 305245 TTTGAACCATATCGATTTAAAACAATTCAGTAAAATGC--TTGAAAT-TAATGATATTGT 305301
| || || || || ||||| ||| | ||| ||| | | | | ||| ||
Sbjct 5776 T----ACGATTTC-ATCCAAAACCT---AGTGATTTGCATTTGCAGTGTGGTTATAAAGT 5827
Query 305302 TATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAA 305361
| ||||||| | || |||||| ||| | || || || || || | |||| ||
Sbjct 5828 TGAACGACATTTAAGAGATGATGATTTAGTTATTTTTAACAGACAGCCTACTTTGCACAA 5887
Query 305362 AATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGT 305421
|||| |||||||| ||| || |||||| | || | | ||||||||| | ||| |
Sbjct 5888 AATGAGTATGATGGGGCATCGCGTAAAAGTACTTCCTTGGTCTACATTTCGAATGAATTT 5947
Query 305422 AAGTGCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478
| | ||||| || ||||| || |||||||| ||||||||||||||| |||||||
Sbjct 5948 AT---CGTGTACATCTCCATATAACGCAGATTTTGACGGAGATGAAATGAATTTGCATGT 6004
Query 305479 ACCTCAA 305485
||| |||
Sbjct 6005 ACCACAA 6011
>seq34095
Length=9364
Score = 104 bits (114), Expect = 6e-17
Identities = 250/366 (68%), Gaps = 27/366 (7%)
Strand=Plus/Minus
Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC 72215
||||||| | | ||||| ||||| |||| ||| |||| ||| || || | |
Sbjct 1133 CATTCCATCAATGACTTTTCCAAAAGCAACATGTCGATTATCTAACCA-GGATGCTTTTC 1075
Query 72216 AAGTG-TAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCA 72274
|||| | || || ||||| || |||||||||||| || | || ||||| || | ||
Sbjct 1074 GAGTGGTTATAAAAAATTGTGATCCATTTGAATCAGGTCCATAATTTGCCATTGATAGCA 1015
Query 72275 AACCTGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATAT-- 72332
||| | || ||||| |||| ||||| |||||| ||| ||| ||||||||
Sbjct 1014 TACCAGGCTCAGAATGTGATAATTGAAAATTTTCATCTGGGAAAACTTCGCCATATATTG 955
Query 72333 ACTTT-GACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTAT 72391
||||| ||| | |||||| ||| || || |||||| |||||| ||||||||||
Sbjct 954 ACTTTCCACCAG---TTCCATTAAAATTGGTAAAATCACCACCTTGACACATAAAATTAG 898
Query 72392 TAATTACTCTATGGA--AAGGAACAGATGCATATC--TACCATTTT------TAC--AAA 72439
||| |||| ||| | | ||||| || | | | ||| |||| ||| |||
Sbjct 897 GAATAACTCGATGAAATATGGAACCTTTGTA-ACCAAAACCCTTTTCTGTTGTACATAAA 839
Query 72440 GTTGATAAAAATTTTCTGAAGTTTTTGGAACAATATC--ATCAAATAATTCAATAACGAT 72497
| | ||||||||||| ||||||||||||||||| ||| | | ||| || || ||
Sbjct 838 GCT--CGAAAATTTTCTGCGGTTTTTGGAACAATATCTGATCGA--AGTTCCATTACAAT 783
Query 72498 TCTACC 72503
||| ||
Sbjct 782 TCTCCC 777
>seq75630
Length=7225
Score = 84.2 bits (92), Expect = 5e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269
|||||||||| | | | || || | | ||| | ||||| |||||||| ||||| |
Sbjct 2951 AAAAGAGCACATGAGAGTTTCATCTACTGACATCATGCCACCTGCATTATCAAATTC-TC 3009
Query 167270 CGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAAC 167328
| || ||||||||||||||||||| ||||||| || | ||| ||| ||||||||||
Sbjct 3010 CACAATAATTTGGTGCTGAAAATAATGTAACTAGTTGTCTCTTGGCAAAGAATTCATAAC 3069
Query 167329 CATCTTCAACAAC 167341
| ||||| || ||
Sbjct 3070 CGTCTTCTACTAC 3082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1184785926237534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |