Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq69808 316 5e-81 seq981 154 3e-32 seq122296 104 6e-17 seq34095 104 6e-17 seq75630 84.2 5e-11 >seq69808 Length=9325 Score = 316 bits (350), Expect = 5e-81 Identities = 585/855 (68%), Gaps = 5/855 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| ||||| | ||| | | ||||| | | ||||| | || | Sbjct 6451 TATTTTGGTTTTAAAACATTAGAAAGATCATATTTGTTAAAAATTAATGGTAAAATTGCT 6510 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || ||||| ||||| | |||||||| ||||||| || || || ||||| | Sbjct 6511 GAAAGACCACAACATATGTTAATGCGTGTTGCAGTTGGTATACACGGTGATAATATTGAT 6570 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||||||||||| |||| || | ||| || | || |||||| | || || Sbjct 6571 GCTGTTATTGAAACTTATAATCTTTTATCAGAACGTTATTTTACTCATGCATCACCAACA 6630 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||||| |||| ||| | | ||||| | || || ||| | || ||| Sbjct 6631 TTATTTGCTGCAGCAACACGTCGTCCTCAATTATCATCATGTTTTTTATTAACAATGGTT 6690 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 |||||||| ||||||||||| | | | | || || || || | || || ||||| Sbjct 6691 GATGATTCAATTGAAGGTATATTTAAATCAATTGAACAATGCGCAATGATATCAAAAAAT 6750 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 |||| || ||||| || | || ||| || || |||||||| || || || Sbjct 6751 GCTGGTGGTATTGGAATAAATGTACATTGCATACGTTCAAAAGGTACATCAATTGCTGGC 6810 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || ||| |||| ||| | || ||||||||| | ||||| || | ||| | | Sbjct 6811 ACAAATGGTATATCAAATGGTTTAGTACCAATGTTACGTGTCTTTAATAATGTTGCTAGA 6870 Query 110724 TATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| ||||||||||||| | || || |||||||||| ||| | ||||| ||| Sbjct 6871 TATGTTGATCAAGGTGGTAATAAACGACCAGGTGCATTTGCTATTTATTTAGAACCATGG 6930 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||| ||||||| |||||||| ||| | | |||||| ||| |||||||| | Sbjct 6931 CATGCAGATATTTTTGAATTTTTAAATTTAAAAAAAAATACTGGAACAGAAGAACATCGT 6990 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 || | |||||||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct 6991 GCTAGGGATTTATTTTATGCAATGTGGATTCCAGATTTATTTATGAAACGTGTTGAAGCT 7050 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 ||| | ||||| | |||||||| ||| | ||||||| ||| | |||||| || Sbjct 7051 GATGATAATTGGTCATTAATGTGTCCACATAAATGTCCTGGTTTATTTAATGTATGGGGT 7110 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAAT 111019 || | ||||| | ||||| ||||||||||| ||||| | | | |||| ||| Sbjct 7111 GAAAAATTTGATCAACTTTATATTAAATATGAAAATGAAGGTCGTGCTAATAAAAC-AAT 7169 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | ||| | | | ||||| || ||||||| |||||||||||||| ||||| || Sbjct 7170 TAAAGCACGTTCATTATGGTTTGCTATAATTGAATCTCAAGTTGAAACTGGTACTCCATA 7229 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 ||| || ||||||||| |||||| ||| ||||||| || | || || ||||| Sbjct 7230 TATGTTATATAAAGATGCGTGTAATCGAAAAAGTAATCAACAAAACATTGGCACCATTAA 7289 Query 111140 GTCTAGTAATTTGTG 111154 | ||||||| |||| Sbjct 7290 ATGTAGTAATCTGTG 7304 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| |||||| || ||||| | || | |||||||||||||| | | ||||| Sbjct 7421 AAGTTACAAAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTT 7480 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | |||||||| | || ||| ||| |||||||||| |||||||||||||| | Sbjct 7481 TACCAGAAGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCT 7540 Query 112696 TAGCTGATGTATTTATGATGATGCG 112720 ||||||||| |||||| | ||||| Sbjct 7541 TAGCTGATGCATTTATTTTAATGCG 7565 >seq981 Length=15247 Score = 154 bits (170), Expect = 3e-32 Identities = 677/1042 (65%), Gaps = 82/1042 (8%) Strand=Plus/Plus Query 278651 AGATGGGAAATTGCTCTATCACCTTCTGAG---GAATTTAAACAAGTATCTTTTGTTAAT 278707 ||||||||| | ||| | |||| || || | ||| ||||||| || ||||||||| Sbjct 2544 AGATGGGAAGTAGCTGTTGCACCATCAGATCGTGGTTTTCAACAAGTTTCATTTGTTAAT 2603 Query 278708 GGTATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAATAAGATTGTGAAG 278767 ||| || |||||||||| |||||||||| ||||| || || ||||| || Sbjct 2604 TCAATTGCAACAACAAAAGGTGGTCGACATGTTGATAATGTTGTTGATGGTATTGTTAAA 2663 Query 278768 AAG---ATTTCAGAGATAATTGAGAAGAAGGAAAAGATTAAGGTAAAATCAAATAATATT 278824 | ||| || ||| | | || || ||| || || ||| || ||| || || Sbjct 2664 CAATTAATTGAAGTATTAAATAAAAAAAAT-AAAGGAGGAAT-TAATATAAAACCAT-TT 2720 Query 278825 AAAGAAC------ACTTGTTTATATTTGTAAATTGTTTGATTATAAATCCTTCATTTGAT 278878 ||| || || | | |||||| |||||| ||| ||| ||||||| |||||||| Sbjct 2721 CAAGTACGTACTCACATTTGGATATTTATAAATTCTTTAATTGTAAATCCAACATTTGAT 2780 Query 278879 TCGCAAACGAAAGATTTCCTAACTACGAT-TAGCA-GTAAA----TTCGGAAGTAAGTTT 278932 |||||||| ||||| || || || | ||| | ||| || ||| || | | Sbjct 2781 TCGCAAACAAAAGA------AAATATGACATTGCAAGCAAAAAGTTTTGGATCAAAATGT 2834 Query 278933 GATTTTGGAGATAAGTTTTATCGTGATTTAGCAAAAACAGATATTATC-AAGAA-TATTA 278990 | ||||| ||| || | | ||||| ||| ||| | ||| | | ||| Sbjct 2835 AGCCTATCTGATAAATTTATTCAATCTGTTTCAAAATCAGGAATTGTTGAAGCAGTTTTA 2894 Query 278991 TCAATACTCATAATTTTAA--AGAGAATAAGCTAACAAATAAAAAGAATGATGGCAAGAA 279048 ||| | || ||||| || | | ||| | || | ||||| || || ||||| Sbjct 2895 TCA-TGGGCAAAATTTAAAGCACAAAATGATTTAGC---TAAAACGAGTGGAAAAAAGAA 2950 Query 279049 GACCAATAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAA 279108 || || ||||| | ||||| |||||| | || ||||| || |||||| || Sbjct 2951 TACTAA--AATTAAA-GGTATACCAAAATTAGAAGATGCTAATGAAGCTGGAAAAAAAAA 3007 Query 279109 ATCTCAAGAATGTGCT-TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTG 279167 | || |||| | |||| | | ||||| |||||||| ||| | || || || Sbjct 3008 TGCACATTTATGTACGCTTATAT-TAACTGAAGGAGATTCAGCTAAGTCTTTAGCTATAT 3066 Query 279168 CTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAA 279227 |||||||| |||| ||||||| ||| | ||||| |||||||| ||| | |||||| || Sbjct 3067 CTGGTTTAGGTGTTGTTGGTCGCGATCATTATGGTGTATTTCCATTACGTGGTAAATTAT 3126 Query 279228 TTAATGCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTG 279287 | || | ||| || | ||||| |||| ||| | || ||||| | Sbjct 3127 TAAACGTTCGAGAGG------CCACACA--------TAAA-CAAATTCTTGAAAATGCCG 3171 Query 279288 AATTGATTAATTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAA------AG 279341 || | | |||||||| |||| | || ||| | | |||||||||| || Sbjct 3172 AAATAAATAATTTAATTAAAATTCTTGGCTTACAATATAAAAAAAAATACATGACCTTAG 3231 Query 279342 AT-ACATCAAG--TTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATG 279398 | | | ||| | |||||||||| ||| | || ||| |||| || |||||| ||||| Sbjct 3232 AGGATTTGAAGAGTCTACGATATGGAAAATTAATGATTATGACTGATCAAGATCAAGATG 3291 Query 279399 GAAGTCACATTAAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT-- 279456 | || || ||||| | || |||||| || |||| |||||||||||||| Sbjct 3292 GTTCCCATATAAAAGGTCTTTTAATTAATTTTATTCATACAAATTGGCCAGAATTGTTAC 3351 Query 279457 GAATCAAAATTTTGTAAGTGTGTTTCA-AACACCAATTATTAAGGCAACTAAAGGTAAAA 279515 | | | ||||| ||| |||| ||||||||| |||| | ||| ||| |||| Sbjct 3352 GTTTACCATTTTTGGAAG---AATTCATTACACCAATTGTTAAAGTAACAAAA---AAAA 3405 Query 279516 AAGAAGAAGT---ATTTTATTCATTG-CAGAAGTTTGAACAATGGAAAGATTCAGTTGAG 279571 |||| ||| | |||||||||||| ||||| |||||| |||||||| || Sbjct 3406 AAGAGGAACTTTCTTTTTATTCATTGCCAGAA-TTTGAAGAATGGAAATTAGCAACACCA 3464 Query 279572 AAT--TCAGCCTCATTCCATACCAAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGG 279629 ||| | | || || ||| ||||| | |||||||||| || || | |||| | Sbjct 3465 AATCATAAAACTTATAAAATA--AAGTACTACAAAGGTTTAGGTACTTCAACATCTAAAG 3522 Query 279630 AAGCAAAAGAATATTTTAAAAA 279651 |||||||||||||||| |||| Sbjct 3523 AAGCAAAAGAATATTTCGAAAA 3544 >seq122296 Length=10093 Score = 104 bits (114), Expect = 6e-17 Identities = 393/607 (65%), Gaps = 20/607 (3%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | || || || | ||||| || || |||| || | ||| Sbjct 5418 TTACAATTTCATGTAGCTACTTTTGTTGATAACGACATGCCTGGCATGCCTAAAGCAATG 5477 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| || || | |||||||| | ||||| | || | ||||| ||||| || || Sbjct 5478 CAAAAGTCAGGTAAGCCTTTAAAAGCTATTAAGGCTCGTTTGAAAGGAAAAGAAGGGCGA 5537 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 |||||||||||| | |||||||||||||| || || ||| | | ||||||||| ||| Sbjct 5538 ATTCGAGGTAATTTGATGGGAAAACGTGTCGACTTCTCTGCTCGTACTGTAATCACTCCT 5597 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125 ||| | | | || | || || | || || |||| ||||| ||| ||||| Sbjct 5598 GATCCAAACTTGCGTATAGATCAAGTTGGTGTACCAAGATCCATTGCACAAAATTTAACA 5657 Query 305126 TTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTAATGGA 305185 ||||| || ||||| | |||||| | || | | |||| ||| Sbjct 5658 TTTCCTGAATTAGTTACTCCGTTTAATATTGACAGAATGCAAGAATTAGTTCGCCGAGGA 5717 Query 305186 AATA-GCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGACAATATC 305244 ||| |||| ||||| || || | || | | |||| | | |||| | ||| Sbjct 5718 AATTCGCAA-TATCCGGGAGCAAAATATATTGTTCGAGACAATGGAGA-AAGAATAGATC 5775 Query 305245 TTTGAACCATATCGATTTAAAACAATTCAGTAAAATGC--TTGAAAT-TAATGATATTGT 305301 | || || || || ||||| ||| | ||| ||| | | | | ||| || Sbjct 5776 T----ACGATTTC-ATCCAAAACCT---AGTGATTTGCATTTGCAGTGTGGTTATAAAGT 5827 Query 305302 TATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAA 305361 | ||||||| | || |||||| ||| | || || || || || | |||| || Sbjct 5828 TGAACGACATTTAAGAGATGATGATTTAGTTATTTTTAACAGACAGCCTACTTTGCACAA 5887 Query 305362 AATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGT 305421 |||| |||||||| ||| || |||||| | || | | ||||||||| | ||| | Sbjct 5888 AATGAGTATGATGGGGCATCGCGTAAAAGTACTTCCTTGGTCTACATTTCGAATGAATTT 5947 Query 305422 AAGTGCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478 | | ||||| || ||||| || |||||||| ||||||||||||||| ||||||| Sbjct 5948 AT---CGTGTACATCTCCATATAACGCAGATTTTGACGGAGATGAAATGAATTTGCATGT 6004 Query 305479 ACCTCAA 305485 ||| ||| Sbjct 6005 ACCACAA 6011 >seq34095 Length=9364 Score = 104 bits (114), Expect = 6e-17 Identities = 250/366 (68%), Gaps = 27/366 (7%) Strand=Plus/Minus Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC 72215 ||||||| | | ||||| ||||| |||| ||| |||| ||| || || | | Sbjct 1133 CATTCCATCAATGACTTTTCCAAAAGCAACATGTCGATTATCTAACCA-GGATGCTTTTC 1075 Query 72216 AAGTG-TAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCA 72274 |||| | || || ||||| || |||||||||||| || | || ||||| || | || Sbjct 1074 GAGTGGTTATAAAAAATTGTGATCCATTTGAATCAGGTCCATAATTTGCCATTGATAGCA 1015 Query 72275 AACCTGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATAT-- 72332 ||| | || ||||| |||| ||||| |||||| ||| ||| |||||||| Sbjct 1014 TACCAGGCTCAGAATGTGATAATTGAAAATTTTCATCTGGGAAAACTTCGCCATATATTG 955 Query 72333 ACTTT-GACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTAT 72391 ||||| ||| | |||||| ||| || || |||||| |||||| |||||||||| Sbjct 954 ACTTTCCACCAG---TTCCATTAAAATTGGTAAAATCACCACCTTGACACATAAAATTAG 898 Query 72392 TAATTACTCTATGGA--AAGGAACAGATGCATATC--TACCATTTT------TAC--AAA 72439 ||| |||| ||| | | ||||| || | | | ||| |||| ||| ||| Sbjct 897 GAATAACTCGATGAAATATGGAACCTTTGTA-ACCAAAACCCTTTTCTGTTGTACATAAA 839 Query 72440 GTTGATAAAAATTTTCTGAAGTTTTTGGAACAATATC--ATCAAATAATTCAATAACGAT 72497 | | ||||||||||| ||||||||||||||||| ||| | | ||| || || || Sbjct 838 GCT--CGAAAATTTTCTGCGGTTTTTGGAACAATATCTGATCGA--AGTTCCATTACAAT 783 Query 72498 TCTACC 72503 ||| || Sbjct 782 TCTCCC 777 >seq75630 Length=7225 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269 |||||||||| | | | || || | | ||| | ||||| |||||||| ||||| | Sbjct 2951 AAAAGAGCACATGAGAGTTTCATCTACTGACATCATGCCACCTGCATTATCAAATTC-TC 3009 Query 167270 CGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAAC 167328 | || ||||||||||||||||||| ||||||| || | ||| ||| |||||||||| Sbjct 3010 CACAATAATTTGGTGCTGAAAATAATGTAACTAGTTGTCTCTTGGCAAAGAATTCATAAC 3069 Query 167329 CATCTTCAACAAC 167341 | ||||| || || Sbjct 3070 CGTCTTCTACTAC 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184785926237534