Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq116239 109 1e-18 >seq116239 Length=11340 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || |||||||| || || ||||| || || Sbjct 4781 AAAATG---CAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAG 4725 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||||||||| | ||| || |||||||| ||||||||| || ||||| ||| || Sbjct 4724 CCGTCTGACACAATTGAAAATGTTAAAGCAAA-GATTCAAGACAAGGAAGGCATTCCACC 4666 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | | || || || |||||||| ||||| ||||| ||||| ||| | || Sbjct 4665 AGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGA 4606 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||| | || || || || || ||||| Sbjct 4605 TTACAACATTCAAAAGGAATCCACACTTCA 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179802451721774