Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq30817 93.3 1e-14 seq92101 89.7 1e-13 seq51791 82.4 2e-11 >seq30817 Length=4284 Score = 93.3 bits (102), Expect = 1e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 229 CACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTG 288 ||| || | ||| ||||| |||||||| || ||||||||||| || || ||||| Sbjct 341 CACAACCACTTCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTG 282 Query 289 CAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGC 348 | || ||||| || | || | |||||| |||||| | | || | ||| || Sbjct 281 TAACGAACCTTCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGC 222 Query 349 CAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTG 408 | || ||||| || ||||| ||||||||||| |||||||| | |||| || || || Sbjct 221 TAATTTGCCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTG 162 Query 409 CTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACGCCGTTGCCGTTCGG 468 ||| || ||| ||||||| || || | | | | ||||| | |||||| || Sbjct 161 CTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGG 102 Query 469 CAGCGTGCGGAATTCTGGATCGTTGCCTAAGTTGCCAAT 507 || |||| ||| ||||| | |||| ||| || || Sbjct 101 CATATAACGGATTTCAGGATCTTGCCCTAGGTTACCGAT 63 >seq92101 Length=2780 Score = 89.7 bits (98), Expect = 1e-13 Identities = 238/359 (66%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 32376 GTGGCTGGACTGATTGCCCGCATCGACAACGAGCGCGGTTTCTGGTGGTCACCATCAAAC 32435 || || ||||||||||| || || || || | || || ||||| ||||| ||||| Sbjct 1224 GTTGCAGGACTGATTGCTAAAATTGATAATGAACATGGGTTTTGGTGATCACCTTCAAAT 1283 Query 32436 CAGGAAATCTATGGCATCCAGGGCACGGCCAGAACCATTGATTTCACCCTGGGTGA--CA 32493 ||||| || |||| || || || || ||| | ||||||| || || ||||| || Sbjct 1284 CAGGAGATTAATGGTATTGTTGGTACTGCAAGACCTGTTGATTTTACACTTGGTGATGCA 1343 Query 32494 CGTCCAGCCGTGCAAACCTGCTGAACGAAAACGAAGTCACCACCATCATTCGCCAGGACG 32553 || | | || || | | |||||||||||| | | ||||| |||| || | | Sbjct 1344 AGT--TGTAGGGCTAATCATTTAAACGAAAACGAAATTGCAACCATTATTCATCAAAAGG 1401 Query 32554 GTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTTTCTGTGCG 32613 | | | || ||||| || | || ||| |||||| | || ||| |||| | | | Sbjct 1402 GATATAGACTTTGGGGAAATAGAACGTGTTCAAGCGATTCAAAGTGGAAGTTTTTATCAG 1461 Query 32614 TTGTTCGCACGGCTGACATCATCAATGACAGCCTGTTGCGTGCACACCTGTGGGCCGTAG 32673 | | || || || | || ||||| || || | ||||||||||| ||||| || | Sbjct 1462 TAAGAAGAACAGCAGATTTAATTAATGATAGTCTTCTTCGTGCACACCTTTGGGCAGTTG 1521 Query 32674 ACCGTGGCATCAC-CAAACAATACGTCAATGACGTGATTGAAGGCGTGAACGCGTACCT 32731 | || ||| || | || ||| | |||| || |||||||| || || || ||||| Sbjct 1522 ATCGAAACATTACTCGTAC-ATATTTGGATGATGTAATTGAAGGTGTAAATGCTTACCT 1579 >seq51791 Length=3022 Score = 82.4 bits (90), Expect = 2e-11 Identities = 268/409 (66%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 32465 CAGAACCATTGATTTCACCCTGGGTGACACGTCCAGCCGTGCAAACCTGCTGAACGAAAA 32524 |||| | |||||||| ||| | ||||| || | | ||||||| | || ||||| Sbjct 2295 CAGAGCTATTGATTTTACCTTAGGTGATACAAGTTGTAGAGCAAACCACTTAAATGAAAA 2236 Query 32525 CGAAGTCACCACCATCATTCGCCAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTC 32584 |||||||| || |||||| || | || | | | || ||||| || | || ||| Sbjct 2235 TGAAGTCACGACAATCATTTATCAAAATGGCTACAGACTATGGGGAAATAGAACATGTTC 2176 Query 32585 CAGCGATCCGAAATGGGCGTTTCTGTGC--GTTGTTCGCACGGCTGACATCATCAATGAC 32642 | |||| |||| ||| | || | ||| ||| || || || || | |||||||| Sbjct 2175 AAACGAT--GAAAGGGGGGCTTTTCTGCCTGTTAGGCGTACTGCAGATCTAATCAATGAT 2118 Query 32643 AGCCTGTTGCGTGCACACCTGTGGGCCGTAGACCGTGGCATCACCAAACAATACGTCAAT 32702 || || | | || || || ||||| || || || || |||||| || | || Sbjct 2117 AGTCTACTTAGGGCTCATCTATGGGCAGTTGATCGCAATATTACCAAAACTTATATAGAT 2058 Query 32703 GACGTGATTGAAGGCGTGAACGCGTACCTGCGCAACCTGGTGAGCCTG-GGCGCAATTCT 32761 || |||||||| || ||||| | || ||| ||| | |||| || || ||| | Sbjct 2057 GATGTGATTGAGGGGGTGAATTCTTATCTG-GCACATTTAAAAGCCCAAGGAGCGATTAT 1999 Query 32762 TGGCGGCACGTGTTGGGCTGACCCTGACTTAAATACTGCTGACCAA-ATCGCTGACGGTA 32820 |||| | |||| || || || | ||||| | ||| || || || |||| | Sbjct 1998 CAGCGGAAAATGTTATGCAACTCCGGAGCTCAATACATC-GACTAATATTGCAAACGGCA 1940 Query 32821 AGGTATACTTTGATTTTGATTTCACGCCTGTTTATCCGGCTGAACACAT 32869 | || || ||||||||||| || ||||| ||||||||||| || || Sbjct 1939 AAGTGTATTTTGATTTTGAGTTTACGCCACCATATCCGGCTGAGCAAAT 1891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135187277377164