Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_025430.1
Length=42351
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 93.3 1e-14
seq92101 89.7 1e-13
seq51791 82.4 2e-11
>seq30817
Length=4284
Score = 93.3 bits (102), Expect = 1e-14
Identities = 188/279 (67%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 229 CACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTG 288
||| || | ||| ||||| |||||||| || ||||||||||| || || |||||
Sbjct 341 CACAACCACTTCTGTTGTATAGCGATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTG 282
Query 289 CAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGC 348
| || ||||| || | || | |||||| |||||| | | || | ||| ||
Sbjct 281 TAACGAACCTTCGATATAGACTTGTGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGC 222
Query 349 CAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTG 408
| || ||||| || ||||| ||||||||||| |||||||| | |||| || || ||
Sbjct 221 TAATTTGCCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTG 162
Query 409 CTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACGCCGTTGCCGTTCGG 468
||| || ||| ||||||| || || | | | | ||||| | |||||| ||
Sbjct 161 CTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGG 102
Query 469 CAGCGTGCGGAATTCTGGATCGTTGCCTAAGTTGCCAAT 507
|| |||| ||| ||||| | |||| ||| || ||
Sbjct 101 CATATAACGGATTTCAGGATCTTGCCCTAGGTTACCGAT 63
>seq92101
Length=2780
Score = 89.7 bits (98), Expect = 1e-13
Identities = 238/359 (66%), Gaps = 6/359 (2%)
Strand=Plus/Plus
Query 32376 GTGGCTGGACTGATTGCCCGCATCGACAACGAGCGCGGTTTCTGGTGGTCACCATCAAAC 32435
|| || ||||||||||| || || || || | || || ||||| ||||| |||||
Sbjct 1224 GTTGCAGGACTGATTGCTAAAATTGATAATGAACATGGGTTTTGGTGATCACCTTCAAAT 1283
Query 32436 CAGGAAATCTATGGCATCCAGGGCACGGCCAGAACCATTGATTTCACCCTGGGTGA--CA 32493
||||| || |||| || || || || ||| | ||||||| || || ||||| ||
Sbjct 1284 CAGGAGATTAATGGTATTGTTGGTACTGCAAGACCTGTTGATTTTACACTTGGTGATGCA 1343
Query 32494 CGTCCAGCCGTGCAAACCTGCTGAACGAAAACGAAGTCACCACCATCATTCGCCAGGACG 32553
|| | | || || | | |||||||||||| | | ||||| |||| || | |
Sbjct 1344 AGT--TGTAGGGCTAATCATTTAAACGAAAACGAAATTGCAACCATTATTCATCAAAAGG 1401
Query 32554 GTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTTTCTGTGCG 32613
| | | || ||||| || | || ||| |||||| | || ||| |||| | | |
Sbjct 1402 GATATAGACTTTGGGGAAATAGAACGTGTTCAAGCGATTCAAAGTGGAAGTTTTTATCAG 1461
Query 32614 TTGTTCGCACGGCTGACATCATCAATGACAGCCTGTTGCGTGCACACCTGTGGGCCGTAG 32673
| | || || || | || ||||| || || | ||||||||||| ||||| || |
Sbjct 1462 TAAGAAGAACAGCAGATTTAATTAATGATAGTCTTCTTCGTGCACACCTTTGGGCAGTTG 1521
Query 32674 ACCGTGGCATCAC-CAAACAATACGTCAATGACGTGATTGAAGGCGTGAACGCGTACCT 32731
| || ||| || | || ||| | |||| || |||||||| || || || |||||
Sbjct 1522 ATCGAAACATTACTCGTAC-ATATTTGGATGATGTAATTGAAGGTGTAAATGCTTACCT 1579
>seq51791
Length=3022
Score = 82.4 bits (90), Expect = 2e-11
Identities = 268/409 (66%), Gaps = 8/409 (2%)
Strand=Plus/Minus
Query 32465 CAGAACCATTGATTTCACCCTGGGTGACACGTCCAGCCGTGCAAACCTGCTGAACGAAAA 32524
|||| | |||||||| ||| | ||||| || | | ||||||| | || |||||
Sbjct 2295 CAGAGCTATTGATTTTACCTTAGGTGATACAAGTTGTAGAGCAAACCACTTAAATGAAAA 2236
Query 32525 CGAAGTCACCACCATCATTCGCCAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTC 32584
|||||||| || |||||| || | || | | | || ||||| || | || |||
Sbjct 2235 TGAAGTCACGACAATCATTTATCAAAATGGCTACAGACTATGGGGAAATAGAACATGTTC 2176
Query 32585 CAGCGATCCGAAATGGGCGTTTCTGTGC--GTTGTTCGCACGGCTGACATCATCAATGAC 32642
| |||| |||| ||| | || | ||| ||| || || || || | ||||||||
Sbjct 2175 AAACGAT--GAAAGGGGGGCTTTTCTGCCTGTTAGGCGTACTGCAGATCTAATCAATGAT 2118
Query 32643 AGCCTGTTGCGTGCACACCTGTGGGCCGTAGACCGTGGCATCACCAAACAATACGTCAAT 32702
|| || | | || || || ||||| || || || || |||||| || | ||
Sbjct 2117 AGTCTACTTAGGGCTCATCTATGGGCAGTTGATCGCAATATTACCAAAACTTATATAGAT 2058
Query 32703 GACGTGATTGAAGGCGTGAACGCGTACCTGCGCAACCTGGTGAGCCTG-GGCGCAATTCT 32761
|| |||||||| || ||||| | || ||| ||| | |||| || || ||| |
Sbjct 2057 GATGTGATTGAGGGGGTGAATTCTTATCTG-GCACATTTAAAAGCCCAAGGAGCGATTAT 1999
Query 32762 TGGCGGCACGTGTTGGGCTGACCCTGACTTAAATACTGCTGACCAA-ATCGCTGACGGTA 32820
|||| | |||| || || || | ||||| | ||| || || || |||| |
Sbjct 1998 CAGCGGAAAATGTTATGCAACTCCGGAGCTCAATACATC-GACTAATATTGCAAACGGCA 1940
Query 32821 AGGTATACTTTGATTTTGATTTCACGCCTGTTTATCCGGCTGAACACAT 32869
| || || ||||||||||| || ||||| ||||||||||| || ||
Sbjct 1939 AAGTGTATTTTGATTTTGAGTTTACGCCACCATATCCGGCTGAGCAAAT 1891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135187277377164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |