Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq83018 102 3e-18 seq63426 100 9e-18 seq63836 98.7 3e-17 seq67516 95.1 4e-16 >seq83018 Length=9708 Score = 102 bits (112), Expect = 3e-18 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 2759 TGTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCC 2817 ||||| ||| || ||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 363 TGTGTGTATAAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCC 422 Query 2818 CTGGTTCAACCCCGGGCTTCAGC 2840 | ||||||| |||||| ||| || Sbjct 423 CCGGTTCAATCCCGGGTTTCGGC 445 >seq63426 Length=56070 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 29070 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAAT 29129 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29130 CCCGGGTTTCGGC 29142 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 32720 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 32779 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 32780 CCGGGTTTCGGC 32791 >seq63836 Length=10278 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 8793 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 8734 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8733 CCGGGTTTCGGC 8722 >seq67516 Length=2739 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||| | Sbjct 958 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAGAGGTCCCCGGTTCAATC 899 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 898 CCGGGTTTCGGC 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15826492818630